Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RG643_RS27715 Genome accession   NZ_CP133753
Coordinates   5925082..5925639 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ZYPA187     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5920082..5930639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG643_RS27700 (RG643_27695) pilY1 5920174..5923665 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  RG643_RS27705 (RG643_27700) pilX 5923677..5924264 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  RG643_RS27710 (RG643_27705) pilW 5924261..5925085 (-) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  RG643_RS27715 (RG643_27710) pilV 5925082..5925639 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  RG643_RS27720 (RG643_27715) - 5925630..5926136 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  RG643_RS27725 (RG643_27720) - 5926242..5926751 (-) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  RG643_RS27730 (RG643_27725) thiO 5926886..5927980 (+) 1095 WP_023108762.1 glycine oxidase ThiO -
  RG643_RS27735 (RG643_27730) pilR 5928026..5929364 (-) 1339 Protein_5486 two-component system response regulator PilR -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=876319 RG643_RS27715 WP_003119423.1 5925082..5925639(-) (pilV) [Pseudomonas aeruginosa strain ZYPA187]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=876319 RG643_RS27715 WP_003119423.1 5925082..5925639(-) (pilV) [Pseudomonas aeruginosa strain ZYPA187]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAAGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACATCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995