Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AABK23_RS23395 Genome accession   NZ_AP027576
Coordinates   4863079..4864071 (-) Length   330 a.a.
NCBI ID   WP_022646319.1    Uniprot ID   -
Organism   Escherichia coli strain LR-62-2     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4858079..4869071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK23_RS23385 (VEE29_44480) yieP 4860971..4861663 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  AABK23_RS23390 (VEE29_44490) mdtD 4861686..4863113 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  AABK23_RS23395 (VEE29_44500) cytR 4863079..4864071 (-) 993 WP_022646319.1 ribose operon transcriptional repressor RbsR Regulator
  AABK23_RS23400 (VEE29_44510) rbsK 4864075..4865004 (-) 930 WP_001361791.1 ribokinase -
  AABK23_RS23405 (VEE29_44520) rbsB 4865130..4866020 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  AABK23_RS23410 (VEE29_44530) rbsC 4866045..4867010 (-) 966 WP_022646318.1 ribose ABC transporter permease -
  AABK23_RS23415 (VEE29_44540) rbsA 4867015..4868520 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  AABK23_RS23420 (VEE29_44550) rbsD 4868528..4868947 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36597.88 Da        Isoelectric Point: 5.2098

>NTDB_id=87630 AABK23_RS23395 WP_022646319.1 4863079..4864071(-) (cytR) [Escherichia coli strain LR-62-2]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVDAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=87630 AABK23_RS23395 WP_022646319.1 4863079..4864071(-) (cytR) [Escherichia coli strain LR-62-2]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGATGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361

Multiple sequence alignment