Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RG644_RS25270 Genome accession   NZ_CP133751
Coordinates   5466344..5466979 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain ZYPA1927     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5461344..5471979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG644_RS25240 (RG644_25240) murB 5462442..5463461 (-) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -
  RG644_RS25245 (RG644_25245) - 5463458..5463922 (-) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  RG644_RS25250 (RG644_25250) kdsB 5463922..5464686 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RG644_RS25255 (RG644_25255) - 5464686..5464871 (-) 186 WP_003091157.1 Trm112 family protein -
  RG644_RS25260 (RG644_25260) lpxK 5464909..5465907 (-) 999 WP_031756493.1 tetraacyldisaccharide 4'-kinase -
  RG644_RS25265 (RG644_25265) - 5465907..5466347 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  RG644_RS25270 (RG644_25270) exbB 5466344..5466979 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RG644_RS25275 (RG644_25275) comA 5467052..5469277 (-) 2226 WP_031756491.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RG644_RS25280 (RG644_25280) - 5469408..5469941 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  RG644_RS25285 (RG644_25285) - 5470029..5471273 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=876286 RG644_RS25270 WP_003091163.1 5466344..5466979(-) (exbB) [Pseudomonas aeruginosa strain ZYPA1927]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=876286 RG644_RS25270 WP_003091163.1 5466344..5466979(-) (exbB) [Pseudomonas aeruginosa strain ZYPA1927]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81