Detailed information NTG0087622

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABK23_RS22370
• Genome accession: NZ_AP027576
• Coordinates: 4655442..4656467 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LR-62-2
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4650442..4661467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABK23_RS22360 (VEE29_42620)	rpmE	4652673..4652885 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABK23_RS22365 (VEE29_42630)	priA	4653088..4655286 (+)	2199	WP_022646377.1	primosomal protein N'	Machinery gene
AABK23_RS22370 (VEE29_42640)	cytR	4655442..4656467 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABK23_RS22375 (VEE29_42650)	ftsN	4656559..4657518 (+)	960	WP_000068834.1	cell division protein FtsN	-
AABK23_RS22380 (VEE29_42660)	hslV	4657611..4658141 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABK23_RS22385 (VEE29_42670)	hslU	4658151..4659482 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
AABK23_RS22390 (VEE29_42680)	menA	4659549..4660475 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABK23_RS22395 (VEE29_42690)	rraA	4660568..4661053 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABK23_RS22400 (VEE29_42700)	zapB	4661138..4661383 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=87622 AABK23_RS22370 WP_000644904.1 4655442..4656467(+) (cytR) [Escherichia coli strain LR-62-2]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=87622 AABK23_RS22370 WP_000644904.1 4655442..4656467(+) (cytR) [Escherichia coli strain LR-62-2]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACCGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGTGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628