Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   WKU41_RS02555 Genome accession   NZ_CP149854
Coordinates   534153..534518 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 2024CK-00032     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 529153..539518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKU41_RS02525 (WKU41_02525) pyrR 529775..530287 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  WKU41_RS02530 (WKU41_02530) ruvX 530399..530833 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  WKU41_RS02535 (WKU41_02535) - 530833..531402 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  WKU41_RS02540 (WKU41_02540) - 531451..532344 (-) 894 WP_015649761.1 energy transducer TonB -
  WKU41_RS02545 (WKU41_02545) gshB 532491..533444 (-) 954 WP_003100943.1 glutathione synthase -
  WKU41_RS02550 (WKU41_02550) pilG 533699..534106 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  WKU41_RS02555 (WKU41_02555) pilH 534153..534518 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  WKU41_RS02560 (WKU41_02560) - 534569..535105 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  WKU41_RS02565 (WKU41_02565) pilJ 535190..537238 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  WKU41_RS02570 (WKU41_02570) pilK 537299..538174 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=876190 WKU41_RS02555 WP_003084587.1 534153..534518(+) (pilH) [Pseudomonas aeruginosa strain 2024CK-00032]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=876190 WKU41_RS02555 WP_003084587.1 534153..534518(+) (pilH) [Pseudomonas aeruginosa strain 2024CK-00032]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGATGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364