Detailed information NTG0876111

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RF679_RS17135
• Genome accession: NZ_CP133720
• Coordinates: 4100135..4101202 (+)
• Length: 355 a.a.
• NCBI ID: WP_309481844.1
• Uniprot ID: -
• Organism: Undibacterium cyanobacteriorum strain 20NA77.5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4095135..4106202

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RF679_RS17110 (RF679_17110)	-	4096176..4096997 (-)	822	WP_309481839.1	hypothetical protein	-
RF679_RS17115 (RF679_17115)	-	4097216..4098361 (+)	1146	WP_309481840.1	sensor domain-containing diguanylate cyclase	-
RF679_RS17120 (RF679_17120)	-	4098467..4098721 (-)	255	WP_309481841.1	YfhL family 4Fe-4S dicluster ferredoxin	-
RF679_RS17125 (RF679_17125)	coaD	4098747..4099235 (-)	489	WP_309481842.1	pantetheine-phosphate adenylyltransferase	-
RF679_RS17130 (RF679_17130)	rsmD	4099325..4099987 (-)	663	WP_309481843.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RF679_RS17135 (RF679_17135)	pilA	4100135..4101202 (+)	1068	WP_309481844.1	signal recognition particle-docking protein FtsY	Machinery gene
RF679_RS17140 (RF679_17140)	-	4101287..4101961 (+)	675	WP_309481845.1	ATP-binding cassette domain-containing protein	-
RF679_RS17145 (RF679_17145)	-	4101994..4102911 (+)	918	WP_309481846.1	permease-like cell division protein FtsX	-
RF679_RS17150 (RF679_17150)	rpoH	4103314..4104213 (+)	900	WP_309481847.1	RNA polymerase sigma factor RpoH	-
RF679_RS17155 (RF679_17155)	-	4104300..4104920 (-)	621	WP_309481848.1	SCO family protein	-
RF679_RS17160 (RF679_17160)	cyoE	4104922..4105806 (-)	885	WP_309481849.1	heme o synthase	-

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 38240.10 Da
• Isoelectric Point: 6.0716

>NTDB_id=876111 RF679_RS17135 WP_309481844.1 4100135..4101202(+) (pilA) [Undibacterium cyanobacteriorum strain 20NA77.5]
MFSFFKKKPVETPAAEPNKLDPTPVNPVASSVETPATSKVESKIQESAAAEPTPNTEKLSWFKRLKQGLAKTSSNLTTLF
VGARIDDDLYDELEAALLMSDAGVEATLFLLEQLKRKVKEEKLTEAEQVKAALKTLLCELLTPLQKSLELGRHQPLVMMI
SGVNGAGKTTTIGKLAMHMQKHQQSVVLAAGDTFRAAAREQLAIWGERNNITVIAQESGDPAAVAFDAVSSAKARGTNVV
MVDTAGRLPTQLHLMEELKKIKRVIGKSMDGAPHEVLLVIDGNTGQNALAQVKAFDDALQLSGLIITKLDGTAKGGVLAA
IAKTRPIPVYFIGVGEQIEDLQAFNAQEFVDALFD

Nucleotide

• Length: 1068 bp

>NTDB_id=876111 RF679_RS17135 WP_309481844.1 4100135..4101202(+) (pilA) [Undibacterium cyanobacteriorum strain 20NA77.5]
ATGTTTAGCTTTTTCAAGAAAAAACCCGTAGAAACACCTGCCGCAGAACCGAATAAACTCGATCCAACGCCCGTCAATCC
AGTGGCCAGCAGCGTCGAAACACCAGCAACGAGCAAGGTCGAGTCTAAGATCCAAGAATCTGCCGCTGCAGAGCCAACGC
CGAACACCGAAAAGCTATCGTGGTTCAAGCGTCTCAAGCAAGGTTTGGCGAAAACCTCTTCCAACCTCACCACACTTTTC
GTCGGTGCGCGCATCGATGATGATTTATACGACGAACTCGAGGCAGCGTTATTGATGTCCGACGCCGGCGTTGAAGCAAC
CCTATTTTTGCTGGAGCAACTCAAACGCAAGGTCAAAGAAGAGAAGCTGACCGAGGCCGAACAGGTCAAAGCCGCCTTGA
AAACCCTCTTGTGCGAGCTACTGACACCTTTGCAAAAATCATTGGAATTAGGGCGTCATCAACCCTTGGTGATGATGATA
TCGGGTGTCAACGGTGCAGGAAAAACCACCACCATTGGCAAACTGGCGATGCACATGCAGAAACATCAGCAATCGGTGGT
GCTCGCAGCGGGCGATACCTTCCGTGCTGCTGCGCGTGAGCAATTGGCGATTTGGGGTGAACGTAACAACATCACGGTGA
TTGCACAAGAATCTGGCGATCCCGCAGCCGTCGCATTCGATGCGGTCAGTTCAGCAAAGGCGCGTGGCACCAATGTCGTC
ATGGTCGACACTGCTGGTCGTTTGCCAACGCAACTCCACTTGATGGAAGAGCTAAAGAAAATTAAACGCGTCATCGGCAA
AAGCATGGACGGCGCGCCGCATGAAGTCTTGCTCGTTATCGATGGCAATACAGGGCAAAATGCGCTCGCACAAGTGAAAG
CCTTTGACGATGCTCTTCAACTTAGCGGCTTGATCATTACCAAACTGGATGGAACGGCGAAAGGTGGCGTACTCGCAGCC
ATCGCGAAAACACGACCAATTCCTGTTTATTTTATTGGCGTTGGCGAACAAATCGAAGACTTGCAAGCATTTAATGCGCA
AGAGTTCGTTGATGCTTTGTTCGATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (75-135)

• SRP54-type protein, GTPase domain (SRP54) (156-354)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.681	100	0.572