Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RGU79_RS01580 Genome accession   NZ_CP133717
Coordinates   340129..340602 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain Ab1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335129..345602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU79_RS01555 (RGU79_01560) - 335592..337697 (-) 2106 WP_001117590.1 HD domain-containing protein -
  RGU79_RS01560 (RGU79_01565) - 337737..337867 (-) 131 Protein_299 hypothetical protein -
  RGU79_RS01565 (RGU79_01570) rpoZ 337906..338184 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RGU79_RS01570 (RGU79_01575) gmk 338257..338886 (-) 630 WP_000015937.1 guanylate kinase -
  RGU79_RS01575 (RGU79_01580) ispH 339009..339959 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RGU79_RS01580 (RGU79_01585) fimU 340129..340602 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  RGU79_RS01585 (RGU79_01590) pilV 340596..341156 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RGU79_RS01590 (RGU79_01595) pilW 341157..342158 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  RGU79_RS01595 (RGU79_01600) pilX 342155..342973 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=876048 RGU79_RS01580 WP_001214065.1 340129..340602(+) (fimU) [Acinetobacter baumannii strain Ab1]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=876048 RGU79_RS01580 WP_001214065.1 340129..340602(+) (fimU) [Acinetobacter baumannii strain Ab1]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1