Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   TOL5_RS18800 Genome accession   NZ_AP024708
Coordinates   4063184..4064065 (-) Length   293 a.a.
NCBI ID   WP_221260565.1    Uniprot ID   -
Organism   Acinetobacter sp. Tol 5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4058184..4069065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOL5_RS18770 (TOL5_37060) - 4058544..4058918 (-) 375 WP_004825098.1 cytochrome b562 -
  TOL5_RS18775 (TOL5_37070) coaBC 4059083..4060348 (-) 1266 WP_005033953.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  TOL5_RS18780 (TOL5_37080) radC 4060451..4061185 (+) 735 WP_034707928.1 RadC family protein -
  TOL5_RS18785 (TOL5_37090) - 4061224..4062135 (+) 912 WP_004825105.1 bestrophin family protein -
  TOL5_RS18790 (TOL5_37100) - 4062234..4062518 (+) 285 WP_199935673.1 antibiotic biosynthesis monooxygenase family protein -
  TOL5_RS18795 (TOL5_37110) - 4062625..4063107 (+) 483 WP_174760887.1 ankyrin repeat domain-containing protein -
  TOL5_RS18800 (TOL5_37120) tonB2 4063184..4064065 (-) 882 WP_221260565.1 energy transducer TonB Machinery gene
  TOL5_RS18805 (TOL5_37130) - 4064296..4064982 (+) 687 WP_005033958.1 hypothetical protein -
  TOL5_RS18810 (TOL5_37140) - 4065134..4065841 (+) 708 WP_009586948.1 DUF3108 domain-containing protein -
  TOL5_RS18815 (TOL5_37150) - 4065945..4066520 (+) 576 WP_004825120.1 xanthine phosphoribosyltransferase -
  TOL5_RS18820 (TOL5_37160) - 4066672..4067535 (+) 864 WP_009586967.1 acyl-CoA thioesterase -
  TOL5_RS18825 (TOL5_37170) - 4067768..4068130 (+) 363 WP_042090293.1 hypothetical protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33347.91 Da        Isoelectric Point: 9.0902

>NTDB_id=87601 TOL5_RS18800 WP_221260565.1 4063184..4064065(-) (tonB2) [Acinetobacter sp. Tol 5]
MIKKLFANTQHTGYWWQDALFVGAVSIAVIVHGLFLSVQFGMPQENNTATKEIAVSIRPSEDKVKDADFLAQADQQGSGT
FRKEHRMSSDMPAQAEDKSAGDQQLEALEQIQQKRELKFEEKVLMTVLSWQKQAEQNDRKKAMEELQSQMQAKAAMVASL
EAQYLQKQQNFSKQQKIKTLDGIQAKQDASAGYLDKFRQKVEMYGNRYYPDLAKQQRLSGEVRLMVILNNEGGIRAIRLI
ESSGHAILDEAAKNSVRKGAPFGRFDAKMKDISELRIVRTWRFDPAESEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=87601 TOL5_RS18800 WP_221260565.1 4063184..4064065(-) (tonB2) [Acinetobacter sp. Tol 5]
ATGATAAAAAAATTATTTGCCAATACGCAACATACTGGGTACTGGTGGCAAGATGCATTATTTGTCGGGGCAGTTTCAAT
TGCTGTAATTGTCCACGGGTTATTTTTATCTGTGCAATTTGGTATGCCGCAAGAAAATAATACTGCGACAAAAGAAATTG
CTGTCAGTATTCGCCCAAGTGAAGATAAAGTCAAAGATGCTGATTTCCTTGCACAAGCAGATCAACAAGGTTCTGGAACC
TTTCGTAAAGAACATCGGATGTCCTCTGATATGCCAGCACAGGCTGAAGATAAAAGTGCAGGAGATCAACAGCTTGAAGC
TTTAGAGCAAATACAGCAAAAACGTGAATTAAAATTTGAAGAAAAAGTGCTGATGACCGTTTTAAGTTGGCAAAAGCAAG
CTGAACAAAACGATCGAAAAAAGGCAATGGAAGAATTACAAAGCCAAATGCAAGCCAAAGCTGCGATGGTGGCGAGCTTA
GAAGCACAATATTTACAGAAGCAGCAAAATTTTAGTAAACAACAAAAAATTAAAACCTTAGATGGCATTCAAGCGAAACA
AGATGCATCGGCTGGTTATTTGGATAAATTCCGTCAAAAAGTCGAAATGTATGGCAACCGCTATTATCCTGATCTTGCTA
AGCAACAGCGCCTTTCAGGTGAAGTTCGTTTAATGGTGATTCTGAATAATGAAGGGGGAATACGCGCAATTCGTTTGATC
GAAAGTTCAGGTCATGCCATTTTAGATGAAGCCGCTAAAAATTCAGTACGTAAGGGTGCTCCATTTGGTCGTTTTGATGC
AAAAATGAAAGATATTTCTGAGCTACGAATTGTCAGAACGTGGCGTTTCGATCCCGCTGAGTCAGAATTTGAAGTCCATT
AG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.769

100

0.72

Multiple sequence alignment