Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RGU78_RS01615 Genome accession   NZ_CP133712
Coordinates   347541..347966 (+) Length   141 a.a.
NCBI ID   WP_342041236.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CRAb1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342541..352966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU78_RS01605 (RGU78_01610) pilY1 343195..347049 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  RGU78_RS01610 (RGU78_01615) pilY2 347062..347544 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  RGU78_RS01615 (RGU78_01620) pilE 347541..347966 (+) 426 WP_342041236.1 type IV pilin protein Machinery gene
  RGU78_RS01620 (RGU78_01625) rpsP 348113..348364 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RGU78_RS01625 (RGU78_01630) rimM 348384..348932 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RGU78_RS01630 (RGU78_01635) trmD 348978..349718 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RGU78_RS01635 (RGU78_01640) rplS 349926..350294 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RGU78_RS01640 (RGU78_01645) - 350346..351287 (-) 942 WP_085946156.1 triacylglycerol lipase -
  RGU78_RS01645 (RGU78_01650) - 351402..352436 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15199.44 Da        Isoelectric Point: 9.0199

>NTDB_id=876006 RGU78_RS01615 WP_342041236.1 347541..347966(+) (pilE) [Acinetobacter baumannii strain CRAb1]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPKQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFRAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=876006 RGU78_RS01615 WP_342041236.1 347541..347966(+) (pilE) [Acinetobacter baumannii strain CRAb1]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTAAACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTAGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

91.489

100

0.915
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511