Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RGU78_RS01610 Genome accession   NZ_CP133712
Coordinates   347062..347544 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CRAb1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342062..352544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU78_RS01600 (RGU78_01605) pilX 342365..343183 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RGU78_RS01605 (RGU78_01610) pilY1 343195..347049 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  RGU78_RS01610 (RGU78_01615) pilY2 347062..347544 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  RGU78_RS01615 (RGU78_01620) pilE 347541..347966 (+) 426 WP_342041236.1 type IV pilin protein Machinery gene
  RGU78_RS01620 (RGU78_01625) rpsP 348113..348364 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RGU78_RS01625 (RGU78_01630) rimM 348384..348932 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RGU78_RS01630 (RGU78_01635) trmD 348978..349718 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RGU78_RS01635 (RGU78_01640) rplS 349926..350294 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RGU78_RS01640 (RGU78_01645) - 350346..351287 (-) 942 WP_085946156.1 triacylglycerol lipase -
  RGU78_RS01645 (RGU78_01650) - 351402..352436 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=876005 RGU78_RS01610 WP_001046417.1 347062..347544(+) (pilY2) [Acinetobacter baumannii strain CRAb1]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=876005 RGU78_RS01610 WP_001046417.1 347062..347544(+) (pilY2) [Acinetobacter baumannii strain CRAb1]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGACAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444