Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RGU78_RS01585 Genome accession   NZ_CP133712
Coordinates   340339..340812 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain CRAb1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335339..345812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU78_RS01560 (RGU78_01565) - 335802..337907 (-) 2106 WP_001117590.1 HD domain-containing protein -
  RGU78_RS01565 (RGU78_01570) - 337947..338077 (-) 131 Protein_299 hypothetical protein -
  RGU78_RS01570 (RGU78_01575) rpoZ 338116..338394 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RGU78_RS01575 (RGU78_01580) gmk 338467..339096 (-) 630 WP_000015937.1 guanylate kinase -
  RGU78_RS01580 (RGU78_01585) ispH 339219..340169 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RGU78_RS01585 (RGU78_01590) fimU 340339..340812 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  RGU78_RS01590 (RGU78_01595) pilV 340806..341366 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RGU78_RS01595 (RGU78_01600) pilW 341367..342368 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  RGU78_RS01600 (RGU78_01605) pilX 342365..343183 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=876000 RGU78_RS01585 WP_001214065.1 340339..340812(+) (fimU) [Acinetobacter baumannii strain CRAb1]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=876000 RGU78_RS01585 WP_001214065.1 340339..340812(+) (fimU) [Acinetobacter baumannii strain CRAb1]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1