Detailed information NTG0875968

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: RGU80_RS10380
• Genome accession: NZ_CP133706
• Coordinates: 2157545..2158246 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain CRAb2
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2152545..2163246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RGU80_RS10350 (RGU80_10375)	-	2152851..2153294 (-)	444	WP_001246675.1	SRPBCC family protein	-
RGU80_RS10355 (RGU80_10380)	tadA	2153364..2153867 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
RGU80_RS10360 (RGU80_10385)	-	2153874..2154998 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
RGU80_RS10365 (RGU80_10390)	ung	2154995..2155708 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
RGU80_RS10370 (RGU80_10395)	-	2155759..2156355 (-)	597	WP_000908455.1	6-carboxytetrahydropterin synthase	-
RGU80_RS10375 (RGU80_10400)	gspK	2156586..2157545 (-)	960	WP_000301460.1	type II secretion system minor pseudopilin GspK	-
RGU80_RS10380 (RGU80_10405)	xcpW	2157545..2158246 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
RGU80_RS10385 (RGU80_10410)	xcpV	2158246..2158626 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
RGU80_RS10390 (RGU80_10415)	-	2158616..2159170 (-)	555	WP_000841367.1	type II secretion system protein	-
RGU80_RS10395 (RGU80_10420)	-	2159180..2159788 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
RGU80_RS10400 (RGU80_10425)	-	2159826..2160599 (-)	774	WP_000497304.1	TatD family hydrolase	-
RGU80_RS10405 (RGU80_10430)	-	2160617..2160958 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
RGU80_RS10410 (RGU80_10435)	-	2160970..2161950 (-)	981	WP_001075408.1	DNA polymerase III subunit delta'	-
RGU80_RS10415 (RGU80_10440)	kdsB	2161962..2162723 (-)	762	WP_000680702.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=875968 RGU80_RS10380 WP_000594572.1 2157545..2158246(-) (xcpW) [Acinetobacter baumannii strain CRAb2]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=875968 RGU80_RS10380 WP_000594572.1 2157545..2158246(-) (xcpW) [Acinetobacter baumannii strain CRAb2]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991