Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   RGU80_RS02310 Genome accession   NZ_CP133706
Coordinates   474134..475018 (+) Length   294 a.a.
NCBI ID   WP_000914772.1    Uniprot ID   A0A245ZX16
Organism   Acinetobacter baumannii strain CRAb2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469134..480018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU80_RS02285 (RGU80_02290) - 469532..470779 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  RGU80_RS02290 (RGU80_02295) wrbA 471067..471660 (+) 594 WP_001183344.1 NAD(P)H:quinone oxidoreductase -
  RGU80_RS02295 (RGU80_02300) - 471713..472288 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  RGU80_RS02300 (RGU80_02305) - 472361..473074 (-) 714 WP_000201542.1 DUF3108 domain-containing protein -
  RGU80_RS02305 (RGU80_02310) - 473232..473903 (-) 672 WP_001193955.1 hypothetical protein -
  RGU80_RS02310 (RGU80_02315) tonB2 474134..475018 (+) 885 WP_000914772.1 energy transducer TonB Machinery gene
  RGU80_RS02315 (RGU80_02320) ybeY 475108..475584 (-) 477 WP_000703567.1 rRNA maturation RNase YbeY -
  RGU80_RS02320 (RGU80_02325) - 475594..476682 (-) 1089 WP_000122983.1 PhoH family protein -
  RGU80_RS02325 (RGU80_02330) miaB 476720..478171 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33596.51 Da        Isoelectric Point: 9.4087

>NTDB_id=875963 RGU80_RS02310 WP_000914772.1 474134..475018(+) (tonB2) [Acinetobacter baumannii strain CRAb2]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKMQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=875963 RGU80_RS02310 WP_000914772.1 474134..475018(+) (tonB2) [Acinetobacter baumannii strain CRAb2]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAATGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A245ZX16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993