Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RFN66_RS19775 Genome accession   NZ_CP133705
Coordinates   3801133..3801414 (-) Length   93 a.a.
NCBI ID   WP_020452985.1    Uniprot ID   A0AAW6KAP3
Organism   Bacillus paralicheniformis strain CP47     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3796133..3806414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS19745 (RFN66_19745) - 3796241..3796366 (-) 126 Protein_3858 peptidoglycan-binding protein -
  RFN66_RS19755 (RFN66_19755) smpB 3796946..3797419 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  RFN66_RS19760 (RFN66_19760) rnr 3797535..3799838 (-) 2304 WP_144497806.1 ribonuclease R -
  RFN66_RS19765 (RFN66_19765) - 3799852..3800598 (-) 747 WP_020452984.1 carboxylesterase -
  RFN66_RS19770 (RFN66_19770) secG 3800739..3800969 (-) 231 WP_003185418.1 preprotein translocase subunit SecG -
  RFN66_RS19775 (RFN66_19775) abrB 3801133..3801414 (-) 282 WP_020452985.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RFN66_RS19780 (RFN66_19780) - 3801443..3801676 (-) 234 WP_164470226.1 helix-turn-helix transcriptional regulator -
  RFN66_RS19785 (RFN66_19785) - 3801829..3802230 (+) 402 WP_020452987.1 transcriptional regulator -
  RFN66_RS19790 (RFN66_19790) - 3802403..3802801 (+) 399 WP_309539560.1 helix-turn-helix transcriptional regulator -
  RFN66_RS19795 (RFN66_19795) - 3802850..3803527 (-) 678 WP_214485304.1 ABC transporter permease -
  RFN66_RS19800 (RFN66_19800) opuCC 3803544..3804461 (-) 918 WP_214485303.1 osmoprotectant ABC transporter substrate-binding protein -
  RFN66_RS19805 (RFN66_19805) - 3804475..3805128 (-) 654 WP_145654554.1 ABC transporter permease -
  RFN66_RS19810 (RFN66_19810) - 3805150..3806289 (-) 1140 WP_105981238.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10358.19 Da        Isoelectric Point: 6.3182

>NTDB_id=875934 RFN66_RS19775 WP_020452985.1 3801133..3801414(-) (abrB) [Bacillus paralicheniformis strain CP47]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=875934 RFN66_RS19775 WP_020452985.1 3801133..3801414(-) (abrB) [Bacillus paralicheniformis strain CP47]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATACACCGACGGAGAAAACATCATTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATCACCACCAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCAAGGGGAGCAGAA
ATGCTGCTGGAAGATATGATGGCGGCCTTGTCAGAAAAATGA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)

AbrB C-terminal domain (AbrB_C)

(53-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

97.849

0.548