Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   RFN66_RS10980 Genome accession   NZ_CP133705
Coordinates   2083382..2083858 (+) Length   158 a.a.
NCBI ID   WP_026579660.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CP47     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2078382..2088858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS10945 (RFN66_10945) - 2078497..2078925 (+) 429 WP_309539952.1 HIT domain-containing protein -
  RFN66_RS10950 (RFN66_10950) - 2079555..2079857 (+) 303 WP_026579664.1 hypothetical protein -
  RFN66_RS10955 (RFN66_10955) - 2080091..2081071 (+) 981 WP_106070747.1 S9 family peptidase -
  RFN66_RS10960 (RFN66_10960) - 2081131..2081352 (+) 222 WP_105978849.1 hypothetical protein -
  RFN66_RS10965 (RFN66_10965) - 2081463..2082059 (+) 597 WP_231006400.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  RFN66_RS10970 (RFN66_10970) - 2082166..2082645 (+) 480 WP_309539953.1 DUF4944 domain-containing protein -
  RFN66_RS10975 (RFN66_10975) - 2082679..2083251 (+) 573 WP_095290608.1 GNAT family N-acetyltransferase -
  RFN66_RS10980 (RFN66_10980) rok 2083382..2083858 (+) 477 WP_026579660.1 hypothetical protein Regulator
  RFN66_RS10985 (RFN66_10985) - 2083978..2084151 (+) 174 WP_309539954.1 hypothetical protein -
  RFN66_RS10990 (RFN66_10990) - 2084504..2085124 (-) 621 WP_026579659.1 hypothetical protein -
  RFN66_RS10995 (RFN66_10995) - 2085685..2086269 (+) 585 WP_020451571.1 TetR family transcriptional regulator -
  RFN66_RS11000 (RFN66_11000) - 2086350..2086682 (+) 333 WP_020451572.1 multidrug efflux SMR transporter -
  RFN66_RS11005 (RFN66_11005) - 2086685..2087002 (+) 318 WP_020451573.1 multidrug efflux SMR transporter -
  RFN66_RS11010 (RFN66_11010) speG 2087031..2087573 (+) 543 WP_020451574.1 spermidine N1-acetyltransferase -
  RFN66_RS11015 (RFN66_11015) - 2087610..2087936 (-) 327 WP_373926112.1 YxeA family protein -
  RFN66_RS11020 (RFN66_11020) - 2088146..2088586 (+) 441 WP_023857604.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18313.17 Da        Isoelectric Point: 10.0055

>NTDB_id=875909 RFN66_RS10980 WP_026579660.1 2083382..2083858(+) (rok) [Bacillus paralicheniformis strain CP47]
MFDEREALRLRLEQLGDAEIQVMRELRKERQDIYSKLRELDRESDPAINKKSSLIDLASAAAEELKQSQIAADKHPPIKT
PSHTIFQSKTTIQREAALNILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPDIKKPARGHYILQKEKDL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=875909 RFN66_RS10980 WP_026579660.1 2083382..2083858(+) (rok) [Bacillus paralicheniformis strain CP47]
ATGTTCGACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTAGGTGATGCGGAGATTCAGGTGATGCGGGAATTGCG
GAAAGAACGACAAGACATTTATTCGAAGCTGCGTGAATTGGATCGGGAGAGTGATCCCGCAATTAACAAAAAATCTTCAT
TAATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAGATTGCCGCTGACAAACATCCGCCCATCAAAACT
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAGCGTGAGGCTGCCTTAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTCAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACAACATTTATGAAGA
GCTTAATGAAACATCGCCCAGATATTAAAAAACCTGCCCGCGGCCATTATATTTTGCAAAAAGAAAAAGACCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

43.407

100

0.5