Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RFN66_RS09905 Genome accession   NZ_CP133705
Coordinates   1883470..1884372 (+) Length   300 a.a.
NCBI ID   WP_026579738.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CP47     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1878470..1889372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS09885 (RFN66_09885) - 1879122..1880819 (+) 1698 WP_145624287.1 hypothetical protein -
  RFN66_RS09890 (RFN66_09890) - 1880816..1881100 (+) 285 WP_020451377.1 FlhB-like flagellar biosynthesis protein -
  RFN66_RS09895 (RFN66_09895) sucC 1881276..1882436 (+) 1161 WP_026579739.1 ADP-forming succinate--CoA ligase subunit beta -
  RFN66_RS09900 (RFN66_09900) sucD 1882455..1883357 (+) 903 WP_020451379.1 succinate--CoA ligase subunit alpha -
  RFN66_RS09905 (RFN66_09905) dprA 1883470..1884372 (+) 903 WP_026579738.1 DNA-processing protein DprA Machinery gene
  RFN66_RS09910 (RFN66_09910) topA 1884577..1886652 (+) 2076 WP_020451381.1 type I DNA topoisomerase -
  RFN66_RS09915 (RFN66_09915) trmFO 1886728..1888032 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RFN66_RS09920 (RFN66_09920) xerC 1888099..1889013 (+) 915 WP_020451383.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33151.58 Da        Isoelectric Point: 10.2363

>NTDB_id=875905 RFN66_RS09905 WP_026579738.1 1883470..1884372(+) (dprA) [Bacillus paralicheniformis strain CP47]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAKQELSNVKRLIRSYEAAGVRM
AAICSPDYPASLKTIHDPPPVLFLKGDVKLLNEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESICSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPHVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLNIEDILSELPPSRTQYPEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=875905 RFN66_RS09905 WP_026579738.1 1883470..1884372(+) (dprA) [Bacillus paralicheniformis strain CP47]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGAAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCCGGAGTCCGCATG
GCCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAGA
TGTTAAACTTCTCAATGAACAAAGACTGATCGGAATTGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTTGCCCAT
CAGGAGAGCATCTGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAATAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCCACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACAGCATATCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCTGGTCCGATCTTTGACGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATCCGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.191

99.667

0.57
  dprA Haemophilus influenzae Rd KW20

45.763

78.667

0.36