Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   RFN66_RS08940 Genome accession   NZ_CP133705
Coordinates   1695397..1695984 (+) Length   195 a.a.
NCBI ID   WP_020451209.1    Uniprot ID   A0A6I7TW81
Organism   Bacillus paralicheniformis strain CP47     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1690397..1700984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS08910 (RFN66_08910) - 1690693..1691145 (+) 453 WP_095290382.1 flavodoxin -
  RFN66_RS08915 (RFN66_08915) dapD 1691252..1691962 (+) 711 WP_065644039.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  RFN66_RS08920 (RFN66_08920) - 1692032..1693156 (+) 1125 WP_065644040.1 N-acetyldiaminopimelate deacetylase -
  RFN66_RS08925 (RFN66_08925) - 1693219..1693464 (+) 246 WP_003181323.1 YkuS family protein -
  RFN66_RS08930 (RFN66_08930) ahpA 1693760..1694302 (+) 543 WP_020451207.1 biofilm-specific peroxidase AhpA -
  RFN66_RS08935 (RFN66_08935) - 1694392..1694850 (+) 459 WP_020451208.1 redoxin domain-containing protein -
  RFN66_RS08940 (RFN66_08940) rok 1695397..1695984 (+) 588 WP_020451209.1 transcriptional regulator Rok Regulator
  RFN66_RS08945 (RFN66_08945) - 1696129..1697085 (-) 957 WP_309539912.1 sporulation protein -
  RFN66_RS08950 (RFN66_08950) - 1697238..1697825 (+) 588 WP_145624243.1 molybdenum cofactor guanylyltransferase -
  RFN66_RS08955 (RFN66_08955) - 1697931..1698944 (+) 1014 WP_026579783.1 molybdopterin-synthase adenylyltransferase MoeB -
  RFN66_RS08960 (RFN66_08960) glp 1698963..1700255 (+) 1293 WP_309539913.1 gephyrin-like molybdotransferase Glp -
  RFN66_RS08965 (RFN66_08965) mobB 1700222..1700749 (+) 528 WP_128822362.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22537.49 Da        Isoelectric Point: 9.9960

>NTDB_id=875903 RFN66_RS08940 WP_020451209.1 1695397..1695984(+) (rok) [Bacillus paralicheniformis strain CP47]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNDTKKDFRPERKTESLPVLAELAAQEMKSYQQQQ
QQPQASQKNQQQTSPQTSSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGEISTETEQQ

Nucleotide


Download         Length: 588 bp        

>NTDB_id=875903 RFN66_RS08940 WP_020451209.1 1695397..1695984(+) (rok) [Bacillus paralicheniformis strain CP47]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTGGAGCAGCTGAATGAGGCTGAGGTTAAGGTGATTAGGGAGTATCA
AATTGAGCGGGATAATATATATGCAAAGCTGCGTGAATTGGATCGTCCATCCAGCTTTAATGATACAAAAAAAGATTTTC
GCCCGGAGCGTAAAACGGAATCTCTCCCTGTTTTAGCTGAATTAGCTGCGCAGGAGATGAAGAGCTATCAGCAACAACAG
CAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCTCCGCAAACCTCCTCACTGCCTGCCGGAATTCCAGATGG
AACGACAAGGCGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAAAACTGCGTGAAGCGGCGATTAAAACATTAA
AACGCCATAATGCGGCCATCAAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGATCCCTAATATG
ACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGGTGA
GATTTCTACCGAGACAGAGCAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TW81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.684

97.436

0.815