Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RFN66_RS08835 Genome accession   NZ_CP133705
Coordinates   1679311..1679772 (-) Length   153 a.a.
NCBI ID   WP_020451191.1    Uniprot ID   A0A6I7TMU9
Organism   Bacillus paralicheniformis strain CP47     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1674311..1684772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS08810 (RFN66_08810) - 1674649..1675829 (-) 1181 Protein_1695 aminotransferase A -
  RFN66_RS08815 (RFN66_08815) - 1676021..1676179 (-) 159 WP_165583461.1 hypothetical protein -
  RFN66_RS08820 (RFN66_08820) - 1676351..1676875 (+) 525 WP_020451188.1 RDD family protein -
  RFN66_RS08825 (RFN66_08825) - 1676972..1678291 (+) 1320 WP_020451189.1 MFS transporter -
  RFN66_RS08830 (RFN66_08830) - 1678365..1679282 (+) 918 WP_020451190.1 chemotaxis protein -
  RFN66_RS08835 (RFN66_08835) kre 1679311..1679772 (-) 462 WP_020451191.1 YkyB family protein Regulator
  RFN66_RS08840 (RFN66_08840) - 1679914..1681215 (-) 1302 WP_020451192.1 MFS transporter -
  RFN66_RS08845 (RFN66_08845) - 1681304..1681801 (-) 498 WP_020451193.1 L,D-transpeptidase family protein -
  RFN66_RS08850 (RFN66_08850) - 1681979..1682836 (-) 858 WP_023857290.1 metallophosphoesterase -
  RFN66_RS08855 (RFN66_08855) fadH 1682983..1683747 (+) 765 WP_105978959.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17573.37 Da        Isoelectric Point: 10.6730

>NTDB_id=875902 RFN66_RS08835 WP_020451191.1 1679311..1679772(-) (kre) [Bacillus paralicheniformis strain CP47]
MDDHNHTKELKPTVENLSKAIYTVNRHAKTATNPKYLYLLKKKALQKLLNEGKGKKVGLHFSKNPRFSQQQSDVLISLGD
YFFHMPPTKEDFASLPHLGTLNHSYRNPKAHMSLNIAKQLLQNYTGIKEKPLVTNRKRPASKPVFKKLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=875902 RFN66_RS08835 WP_020451191.1 1679311..1679772(-) (kre) [Bacillus paralicheniformis strain CP47]
ATGGACGACCATAATCATACGAAAGAATTAAAACCGACAGTTGAAAACCTTTCAAAAGCGATTTATACAGTTAATCGCCA
TGCAAAAACCGCGACTAATCCCAAATACCTGTATCTTCTGAAAAAGAAAGCTTTGCAAAAGCTGCTTAATGAAGGAAAGG
GTAAAAAGGTAGGCCTTCACTTTTCGAAAAATCCAAGATTCAGCCAGCAGCAGTCAGATGTGCTGATTTCTCTCGGAGAC
TACTTTTTTCACATGCCTCCAACAAAAGAAGACTTCGCAAGCCTTCCACACTTAGGTACATTAAATCATTCGTATCGGAA
CCCTAAAGCTCATATGTCCTTGAATATAGCGAAACAGCTTCTTCAAAACTACACGGGAATTAAGGAAAAACCGCTCGTCA
CAAACCGGAAGCGCCCTGCCTCAAAGCCCGTCTTCAAGAAGCTTGGCGAAAGCTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TMU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

82.468

100

0.83