Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RFN66_RS07350 Genome accession   NZ_CP133705
Coordinates   1414261..1416090 (+) Length   609 a.a.
NCBI ID   WP_023856662.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CP47     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1409261..1421090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS07335 (RFN66_07335) - 1410444..1411163 (-) 720 WP_020450941.1 response regulator -
  RFN66_RS07340 (RFN66_07340) - 1411167..1412690 (-) 1524 WP_268915989.1 sensor histidine kinase -
  RFN66_RS07345 (RFN66_07345) - 1412900..1414048 (+) 1149 WP_309539877.1 competence protein CoiA family protein -
  RFN66_RS07350 (RFN66_07350) pepF 1414261..1416090 (+) 1830 WP_023856662.1 oligoendopeptidase F Regulator
  RFN66_RS07355 (RFN66_07355) - 1416148..1416315 (-) 168 WP_023856663.1 hypothetical protein -
  RFN66_RS07360 (RFN66_07360) spxH 1416727..1417629 (-) 903 WP_003180650.1 protease adaptor protein SpxH -
  RFN66_RS07365 (RFN66_07365) - 1417626..1418024 (-) 399 WP_003180652.1 thiol management oxidoreductase -
  RFN66_RS07370 (RFN66_07370) - 1418308..1418961 (-) 654 WP_105979045.1 lytic transglycosylase domain-containing protein -
  RFN66_RS07375 (RFN66_07375) - 1418974..1419546 (-) 573 WP_023856666.1 CYTH domain-containing protein -
  RFN66_RS07380 (RFN66_07380) - 1419677..1420042 (+) 366 WP_003180659.1 hypothetical protein -
  RFN66_RS07385 (RFN66_07385) - 1420074..1420709 (+) 636 WP_003180661.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70361.88 Da        Isoelectric Point: 4.8544

>NTDB_id=875899 RFN66_RS07350 WP_023856662.1 1414261..1416090(+) (pepF) [Bacillus paralicheniformis strain CP47]
MAEEKKSKKLPSREEVKQEDTWRLEDIFPSDDAWSEEFQAVKELLPKLSEFKGRLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKAANLYTQAASATAYMVPEILSIQEEKLQQFLLEKEELKLYSHALEEINKERPHVLSEE
EEGILAEASDVLSSSSNTFGMLNNADMEFPEITDENGEKVQLTHGNYVTFLESENRDVRRAAFKAVYETYGRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSIPEEVYDNLVSTINKHLPLLHRYVELRKKVLELDEVHMYDLYTPLVKDSGM
KVTYEQAKDYMLKGLTPLGEEYSSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYLLNTIDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHEIHSKAQ
EGEPLTPELLTSIYYDLNKKYFGDNIEIDKEIGLEWSRIPHFYYNYYVYQYATGFSAAQALSQQILKEGKSAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTSSEPIEAACKKFEEQLNEMEELLQKVNHS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=875899 RFN66_RS07350 WP_023856662.1 1414261..1416090(+) (pepF) [Bacillus paralicheniformis strain CP47]
GTGGCTGAAGAAAAAAAATCGAAGAAACTGCCTTCAAGAGAAGAGGTGAAGCAAGAAGACACGTGGAGACTTGAGGATAT
CTTCCCGTCAGATGATGCTTGGAGCGAGGAATTTCAAGCCGTTAAAGAACTGCTGCCCAAGCTTTCCGAATTCAAGGGCA
GGCTCGGCCATTCCGCCGATGATCTATATGAAGCGCTGACTTATCAGGATAAGGTGATGGAGCGTCTCGGGAAGCTGTAT
ACTTACGCTCACATGCGCTATGATCAGGATACTGGAAATTCTTTTTACCAAGGTCTCAATGATAAAGCGGCCAACCTCTA
TACCCAGGCAGCGAGCGCAACGGCCTACATGGTGCCGGAAATACTATCGATTCAGGAAGAAAAGCTTCAGCAGTTCCTGC
TGGAAAAAGAGGAGTTAAAGCTTTACTCGCATGCTCTCGAAGAAATCAATAAAGAGCGTCCTCACGTACTGAGCGAGGAG
GAGGAAGGAATTTTGGCCGAAGCGTCTGATGTTCTTTCATCTTCTTCCAACACGTTCGGCATGCTGAATAACGCTGATAT
GGAATTTCCGGAGATCACCGATGAAAATGGAGAAAAGGTACAGCTCACACACGGCAATTATGTCACCTTTTTGGAAAGCG
AGAACCGCGATGTCCGCCGCGCGGCATTCAAGGCGGTTTACGAAACATACGGCCGCTTTAAAAACACGCTCGCTTCCACG
CTCAGCGGAGCTGTGAAAAAAGACAACTTTTATGCGAAGGTTAAACATTATAAATCGGCGCGGGAAGCTGCTTTGTCGCG
AAACAGCATTCCTGAAGAAGTCTATGACAATCTTGTCAGCACGATCAACAAGCATCTCCCGCTTCTTCACCGCTATGTTG
AGCTTAGAAAAAAAGTGCTTGAGCTTGATGAGGTACACATGTATGACCTGTATACTCCGCTGGTAAAGGACTCTGGAATG
AAAGTTACCTACGAGCAGGCAAAGGACTATATGCTAAAAGGTTTGACGCCTTTAGGGGAAGAATATTCATCCATTCTGAA
AGAAGGCTTGAACAACCGCTGGGTCGATGTGTATGAAAACAAAGGAAAACGCAGCGGCGCTTATTCTTCAGGAACTTACG
GAACCAATCCGTATATTTTGATGAACTGGCAGGACAACGTCAATAATTTGTTTACGCTCGTCCATGAATTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCTTACCCGTACGGAAACTACAGCATTTTCGTAGCCGAAGTAGCTTCTAC
GACGAATGAAGCACTTTTGGGAGAATACTTGCTGAATACAATCGACGATGAAAAACAGCGGCTCTACATTTTGAATCATA
TGCTTGAAGGCTTCAAAGGAACGGTTTTCAGACAAACGATGTTTGCCGAATTTGAACATGAGATCCATAGCAAAGCCCAG
GAAGGGGAACCGCTGACACCTGAGCTGTTAACGAGCATCTACTATGATTTGAATAAGAAATATTTCGGTGACAATATTGA
GATTGATAAGGAAATCGGTCTTGAGTGGTCAAGAATACCGCATTTCTATTACAATTATTATGTGTATCAGTATGCGACAG
GCTTCAGTGCAGCTCAGGCACTCAGTCAGCAGATTTTAAAAGAAGGCAAATCGGCTGTTGACCGCTATATTGAGTTCTTG
AAAGCGGGTAGCTCGGATTATCCGATTGAAGTGCTGAAAAAAGCCGGTGTTGATATGACATCTTCGGAGCCGATCGAAGC
TGCGTGCAAAAAGTTTGAAGAGCAGCTGAACGAAATGGAAGAACTTTTGCAAAAAGTCAATCATTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.419

98.03

0.494