Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RFN66_RS06660 Genome accession   NZ_CP133705
Coordinates   1267153..1267731 (+) Length   192 a.a.
NCBI ID   WP_026579946.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CP47     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1262153..1272731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS23450 - 1262651..1263157 (-) 507 WP_370510583.1 methyl-accepting chemotaxis protein -
  RFN66_RS23455 - 1263458..1263829 (-) 372 Protein_1261 protoglobin family protein -
  RFN66_RS06645 (RFN66_06645) - 1264050..1265600 (-) 1551 WP_050821016.1 FAD-dependent oxidoreductase -
  RFN66_RS06650 (RFN66_06650) - 1265721..1266578 (+) 858 WP_020450827.1 SDR family oxidoreductase -
  RFN66_RS06655 (RFN66_06655) - 1266647..1266880 (-) 234 WP_020450828.1 IDEAL domain-containing protein -
  RFN66_RS06660 (RFN66_06660) comK 1267153..1267731 (+) 579 WP_026579946.1 competence protein ComK Regulator
  RFN66_RS06665 (RFN66_06665) - 1267725..1268090 (-) 366 WP_020450830.1 hypothetical protein -
  RFN66_RS06670 (RFN66_06670) - 1268298..1268909 (+) 612 WP_309539856.1 TVP38/TMEM64 family protein -
  RFN66_RS06675 (RFN66_06675) lepB 1268922..1269440 (+) 519 WP_020450832.1 signal peptidase I -
  RFN66_RS06680 (RFN66_06680) - 1269572..1271347 (-) 1776 WP_035339047.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22420.64 Da        Isoelectric Point: 8.6274

>NTDB_id=875890 RFN66_RS06660 WP_026579946.1 1267153..1267731(+) (comK) [Bacillus paralicheniformis strain CP47]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=875890 RFN66_RS06660 WP_026579946.1 1267153..1267731(+) (comK) [Bacillus paralicheniformis strain CP47]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGTTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTTTATCCGAAGGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672