Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RFN66_RS02560 Genome accession   NZ_CP133705
Coordinates   501704..502657 (+) Length   317 a.a.
NCBI ID   WP_026580546.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CP47     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 496704..507657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS02545 (RFN66_02545) - 496752..498179 (+) 1428 WP_105980708.1 HAMP domain-containing sensor histidine kinase -
  RFN66_RS23405 - 498211..499164 (-) 954 WP_373367326.1 methyl-accepting chemotaxis protein -
  RFN66_RS23410 - 499213..499929 (-) 717 Protein_472 MCP four helix bundle domain-containing protein -
  RFN66_RS02555 (RFN66_02555) - 500065..501426 (-) 1362 WP_026580545.1 aspartate kinase -
  RFN66_RS02560 (RFN66_02560) ceuB 501704..502657 (+) 954 WP_026580546.1 ABC transporter permease Machinery gene
  RFN66_RS02565 (RFN66_02565) - 502647..503591 (+) 945 WP_020450171.1 iron chelate uptake ABC transporter family permease subunit -
  RFN66_RS02570 (RFN66_02570) - 503591..504349 (+) 759 WP_020450172.1 ABC transporter ATP-binding protein -
  RFN66_RS02575 (RFN66_02575) - 504364..505311 (+) 948 WP_145624602.1 siderophore ABC transporter substrate-binding protein -
  RFN66_RS02580 (RFN66_02580) - 505493..506914 (-) 1422 WP_026580547.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35107.47 Da        Isoelectric Point: 10.1004

>NTDB_id=875883 RFN66_RS02560 WP_026580546.1 501704..502657(+) (ceuB) [Bacillus paralicheniformis strain CP47]
MKLRYLLLMLIILSISSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLNYKRVVNIGLIIVSIISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=875883 RFN66_RS02560 WP_026580546.1 501704..502657(+) (ceuB) [Bacillus paralicheniformis strain CP47]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCAATCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGATCTTTTCCGCTTTAACGAGGACGAAATTCAAACGCTTTACATAAGTAGAATTCCGCGCTTGATTAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATTTGCGGGCTGATCATGCAGCAGCTAACGCGCAATAAATTTGTTTCACCGACCACCGCT
GGAACGATGGATTGGGCGAGGCTCGGTGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTGGTTAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGTTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATCT
TCATCCCTCTCGTCGGTATGATGCTCGGAAGTGTTGTCAGCGCCATCTCCACCTTCATGGCTTATCAGTACAATATCATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTGGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTTACGTTGGCCGGGATGGGGGAGTCTTTTTCCATCAATCTTGGAT
TGAATTATAAGCGGGTGGTCAATATCGGATTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGGTCGGTACG
CTTCCCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATCTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCATAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514