Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RFN66_RS00260 Genome accession   NZ_CP133705
Coordinates   46961..47251 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CP47     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 41961..52251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS00220 (RFN66_00220) - 41984..42313 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  RFN66_RS00225 (RFN66_00225) - 42325..42765 (+) 441 WP_020449792.1 YaaR family protein -
  RFN66_RS00230 (RFN66_00230) holB 42777..43766 (+) 990 WP_020449793.1 DNA polymerase III subunit delta' -
  RFN66_RS00235 (RFN66_00235) - 43769..44596 (+) 828 WP_020449794.1 stage 0 sporulation family protein -
  RFN66_RS00240 (RFN66_00240) yabA 44611..44973 (+) 363 WP_020449795.1 DNA replication initiation control protein YabA -
  RFN66_RS00245 (RFN66_00245) - 45038..45781 (+) 744 WP_020449796.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RFN66_RS00250 (RFN66_00250) - 45768..46061 (+) 294 WP_020449797.1 GIY-YIG nuclease family protein -
  RFN66_RS00255 (RFN66_00255) rsmI 46036..46911 (+) 876 WP_041817399.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RFN66_RS00260 (RFN66_00260) abrB 46961..47251 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RFN66_RS00265 (RFN66_00265) metG 47759..49747 (+) 1989 WP_020449799.1 methionine--tRNA ligase -
  RFN66_RS00270 (RFN66_00270) - 49832..50599 (+) 768 WP_309539649.1 TatD family hydrolase -
  RFN66_RS00275 (RFN66_00275) - 50844..52040 (+) 1197 WP_309539650.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=875877 RFN66_RS00260 WP_085959887.1 46961..47251(-) (abrB) [Bacillus paralicheniformis strain CP47]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=875877 RFN66_RS00260 WP_085959887.1 46961..47251(-) (abrB) [Bacillus paralicheniformis strain CP47]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938