Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RFN65_RS20845 Genome accession   NZ_CP133703
Coordinates   4040684..4040974 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain CP35     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4035684..4045974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS20830 (RFN65_20830) yabE 4035879..4037192 (-) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -
  RFN65_RS20835 (RFN65_20835) dayD 4037348..4038115 (-) 768 WP_309529928.1 TatD family hydrolase -
  RFN65_RS20840 (RFN65_20840) metG 4038195..4040189 (-) 1995 WP_309529929.1 methionine--tRNA ligase -
  RFN65_RS20845 (RFN65_20845) abrB 4040684..4040974 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  RFN65_RS20850 (RFN65_20850) rsmI 4041023..4041901 (-) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RFN65_RS20855 (RFN65_20855) yazA 4041876..4042175 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  RFN65_RS20860 (RFN65_20860) trmNF 4042162..4042905 (-) 744 WP_063336208.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RFN65_RS20865 (RFN65_20865) yabA 4042964..4043323 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  RFN65_RS20870 (RFN65_20870) ricT 4043338..4044165 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  RFN65_RS20875 (RFN65_20875) holB 4044168..4045157 (-) 990 WP_015482689.1 DNA polymerase III subunit delta' -
  RFN65_RS20880 (RFN65_20880) yaaR 4045169..4045609 (-) 441 WP_015382556.1 YaaR family protein -
  RFN65_RS20885 (RFN65_20885) darA 4045622..4045951 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=875872 RFN65_RS20845 WP_003226760.1 4040684..4040974(+) (abrB) [Bacillus subtilis strain CP35]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=875872 RFN65_RS20845 WP_003226760.1 4040684..4040974(+) (abrB) [Bacillus subtilis strain CP35]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1