Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RFN65_RS16550 Genome accession   NZ_CP133703
Coordinates   3190140..3190934 (-) Length   264 a.a.
NCBI ID   WP_003243354.1    Uniprot ID   A0AAE2SGN5
Organism   Bacillus subtilis strain CP35     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3185140..3195934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS16515 (RFN65_16515) ephM 3185982..3186842 (-) 861 WP_309529768.1 epoxide hydrolase EphM -
  RFN65_RS16520 (RFN65_16520) spdL 3186829..3187161 (-) 333 WP_003242803.1 SdpC immunity protein SpdL -
  RFN65_RS16525 (RFN65_16525) yfhK 3187246..3187764 (-) 519 WP_015252515.1 SH3 domain-containing protein -
  RFN65_RS16530 (RFN65_16530) yfhJ 3187909..3188178 (-) 270 WP_251218338.1 YfhJ family protein -
  RFN65_RS16535 (RFN65_16535) sspK 3188303..3188455 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  RFN65_RS16540 (RFN65_16540) yfhI 3188487..3189680 (-) 1194 WP_003243500.1 MFS transporter -
  RFN65_RS16545 (RFN65_16545) yfhH 3189824..3190138 (-) 315 WP_003233553.1 YfhH family protein -
  RFN65_RS16550 (RFN65_16550) recX 3190140..3190934 (-) 795 WP_003243354.1 recombination regulator RecX Regulator
  RFN65_RS16555 (RFN65_16555) yfhF 3191023..3191932 (+) 910 Protein_3257 TIGR01777 family oxidoreductase -
  RFN65_RS16560 (RFN65_16560) yfhE 3191987..3192097 (+) 111 WP_003223230.1 YfhE family protein -
  RFN65_RS16565 (RFN65_16565) yfhD 3192164..3192355 (+) 192 WP_014479215.1 YfhD family protein -
  RFN65_RS16570 (RFN65_16570) yfhC 3192394..3192978 (-) 585 WP_309529769.1 nitroreductase -
  RFN65_RS16575 (RFN65_16575) yfhB 3193066..3193947 (-) 882 WP_309529770.1 PhzF family phenazine biosynthesis isomerase -
  RFN65_RS16580 (RFN65_16580) sxzA 3194062..3195093 (-) 1032 WP_063335719.1 iron chelate uptake ABC transporter family permease subunit -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31013.23 Da        Isoelectric Point: 6.6686

>NTDB_id=875861 RFN65_RS16550 WP_003243354.1 3190140..3190934(-) (recX) [Bacillus subtilis strain CP35]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=875861 RFN65_RS16550 WP_003243354.1 3190140..3190934(-) (recX) [Bacillus subtilis strain CP35]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCTTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

100

100

1