Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RFN65_RS15485 Genome accession   NZ_CP133703
Coordinates   3000005..3000583 (-) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2995005..3005583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS15450 (RFN65_15450) lepB 2995009..2995515 (-) 507 WP_003233128.1 signal peptidase I -
  RFN65_RS15455 (RFN65_15455) yhjE 2995517..2996140 (-) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  RFN65_RS15460 (RFN65_15460) - 2996292..2996654 (+) 363 WP_003233132.1 hypothetical protein -
  RFN65_RS15465 (RFN65_15465) yhjC 2996862..2997062 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  RFN65_RS15470 (RFN65_15470) yhjB 2997059..2998528 (+) 1470 WP_251218204.1 sodium:solute symporter -
  RFN65_RS15475 (RFN65_15475) yhjA 2998572..2998841 (-) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  RFN65_RS15480 (RFN65_15480) yhxD 2999059..2999958 (+) 900 WP_063334995.1 SDR family oxidoreductase -
  RFN65_RS15485 (RFN65_15485) comK 3000005..3000583 (-) 579 WP_015483050.1 competence transcription factor ComK Regulator
  RFN65_RS15490 (RFN65_15490) yhzC 3000876..3001109 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  RFN65_RS15495 (RFN65_15495) yhxC 3001137..3001994 (-) 858 WP_015483049.1 SDR family oxidoreductase -
  RFN65_RS15500 (RFN65_15500) comW 3002106..3003635 (+) 1530 WP_309529741.1 FAD-dependent oxidoreductase -
  RFN65_RS21200 - 3003690..3004316 (+) 627 Protein_3065 protoglobin domain-containing protein -
  RFN65_RS21205 - 3004557..3005072 (+) 516 WP_396121704.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=875856 RFN65_RS15485 WP_015483050.1 3000005..3000583(-) (comK) [Bacillus subtilis strain CP35]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=875856 RFN65_RS15485 WP_015483050.1 3000005..3000583(-) (comK) [Bacillus subtilis strain CP35]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99