NTDB

Overview

Name	med	Type	Regulator
Locus tag	RFN65_RS15035	Genome accession	NZ_CP133703
Coordinates	2910859..2911812 (-)	Length	317 a.a.
NCBI ID	WP_014476425.1	Uniprot ID	A0A0K6M9I2
Organism	Bacillus subtilis strain CP35
Function	regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 2905859..2916812

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RFN65_RS15005 (RFN65_15005)	appD	2905981..2906967 (-)	987	WP_015383344.1	oligopeptide ABC transporter ATP-binding protein AppD	-
RFN65_RS15010 (RFN65_15010)	yjaZ	2907159..2907944 (-)	786	WP_309529712.1	DUF2268 domain-containing protein	-
RFN65_RS15015 (RFN65_15015)	fabF	2908020..2909261 (-)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
RFN65_RS15020 (RFN65_15020)	fabH	2909284..2910222 (-)	939	WP_015483083.1	beta-ketoacyl-ACP synthase III	-
RFN65_RS15025 (RFN65_15025)	yjzB	2910387..2910623 (+)	237	WP_015383342.1	spore coat protein YjzB	-
RFN65_RS15030 (RFN65_15030)	comZ	2910653..2910844 (-)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
RFN65_RS15035 (RFN65_15035)	med	2910859..2911812 (-)	954	WP_014476425.1	transcriptional regulator Med	Regulator
RFN65_RS15040 (RFN65_15040)	-	2911902..2912459 (-)	558	WP_015383340.1	hypothetical protein	-
RFN65_RS15045 (RFN65_15045)	-	2912541..2913275 (-)	735	WP_014479433.1	hypothetical protein	-
RFN65_RS15050 (RFN65_15050)	yjzD	2913526..2913711 (+)	186	WP_003245236.1	YjzD family protein	-
RFN65_RS15055 (RFN65_15055)	yjzC	2913757..2913936 (-)	180	WP_003245356.1	YjzC family protein	-
RFN65_RS15060 (RFN65_15060)	argF	2914022..2914981 (-)	960	WP_100506189.1	ornithine carbamoyltransferase	-

Sequence

Protein

Download Length: 317 a.a. Molecular weight: 35310.84 Da Isoelectric Point: 4.6031

                                >NTDB_id=875853 RFN65_RS15035 WP_014476425.1 2910859..2911812(-) (med) [Bacillus subtilis strain CP35]

MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED

FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ

PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL

GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

Download Length: 954 bp

                                >NTDB_id=875853 RFN65_RS15035 WP_014476425.1 2910859..2911812(-) (med) [Bacillus subtilis strain CP35]

TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT

TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA

TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT

TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACCTGGTCGGCGAAGATTA

TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTCAGCGGGGAAGCAA

TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCCTCCTTTACGTGGCAG

CCTGAGGTTGATGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG

GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG

GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG

GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG

CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATA

AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0K6M9I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997

Detailed information NTG0875853