Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RFN65_RS13190 Genome accession   NZ_CP133703
Coordinates   2597012..2597476 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain CP35     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2592012..2602476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS13170 (RFN65_13170) fadH 2593200..2593964 (-) 765 WP_014476659.1 2,4-dienoyl-CoA reductase -
  RFN65_RS13175 (RFN65_13175) ppeE 2594107..2594967 (+) 861 WP_063336162.1 metallophosphoesterase -
  RFN65_RS13180 (RFN65_13180) ltdD 2595024..2595518 (+) 495 WP_080467397.1 L,D-transpeptidase family protein -
  RFN65_RS13185 (RFN65_13185) ykuC 2595594..2596886 (+) 1293 WP_014479656.1 MFS transporter -
  RFN65_RS13190 (RFN65_13190) kre 2597012..2597476 (+) 465 WP_003232406.1 YkyB family protein Regulator
  RFN65_RS13195 (RFN65_13195) cheV 2597520..2598431 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  RFN65_RS13200 (RFN65_13200) - 2598635..2598796 (+) 162 WP_003245246.1 hypothetical protein -
  RFN65_RS13205 (RFN65_13205) dapX 2598998..2600179 (+) 1182 WP_014476653.1 aminotransferase A -
  RFN65_RS13210 (RFN65_13210) kinA 2600189..2602009 (-) 1821 WP_063336164.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=875844 RFN65_RS13190 WP_003232406.1 2597012..2597476(+) (kre) [Bacillus subtilis strain CP35]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=875844 RFN65_RS13190 WP_003232406.1 2597012..2597476(+) (kre) [Bacillus subtilis strain CP35]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1