Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   RFN65_RS13090 Genome accession   NZ_CP133703
Coordinates   2581024..2581599 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2576024..2586599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS13065 (RFN65_13065) mobB 2576420..2576941 (-) 522 WP_251218374.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  RFN65_RS13070 (RFN65_13070) glp 2576902..2578194 (-) 1293 WP_309529630.1 gephyrin-like molybdotransferase Glp -
  RFN65_RS13075 (RFN65_13075) moeB 2578212..2579231 (-) 1020 WP_251218372.1 molybdopterin-synthase adenylyltransferase MoeB -
  RFN65_RS13080 (RFN65_13080) mobA 2579282..2579881 (-) 600 WP_100506090.1 molybdenum cofactor guanylyltransferase -
  RFN65_RS13085 (RFN65_13085) cse15 2580018..2580983 (+) 966 WP_100506091.1 spore protein Cse15 -
  RFN65_RS13090 (RFN65_13090) rok 2581024..2581599 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  RFN65_RS13095 (RFN65_13095) ykuV 2582065..2582511 (-) 447 WP_100506092.1 thiol-disulfide oxidoreductase YkuV -
  RFN65_RS13100 (RFN65_13100) ahpA 2582582..2583124 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  RFN65_RS13105 (RFN65_13105) mscT 2583361..2584164 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  RFN65_RS13110 (RFN65_13110) ykuS 2584200..2584445 (-) 246 WP_309529631.1 YkuS family protein -
  RFN65_RS13115 (RFN65_13115) dapI 2584507..2585631 (-) 1125 WP_015383541.1 N-acetyldiaminopimelate deacetylase -
  RFN65_RS13120 (RFN65_13120) dapD 2585701..2586411 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=875843 RFN65_RS13090 WP_003232378.1 2581024..2581599(-) (rok) [Bacillus subtilis strain CP35]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=875843 RFN65_RS13090 WP_003232378.1 2581024..2581599(-) (rok) [Bacillus subtilis strain CP35]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACTACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1