Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RFN65_RS12970 Genome accession   NZ_CP133703
Coordinates   2557242..2557520 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain CP35     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2552242..2562520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS12950 (RFN65_12950) ade 2552306..2554039 (-) 1734 WP_309529625.1 adenine deaminase -
  RFN65_RS12955 (RFN65_12955) ktrC 2554195..2554860 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  RFN65_RS12960 (RFN65_12960) ykqA 2554923..2555750 (-) 828 WP_309529626.1 gamma-glutamylcyclotransferase -
  RFN65_RS12965 (RFN65_12965) kinC 2555766..2557052 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  RFN65_RS12970 (RFN65_12970) abrB 2557242..2557520 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  RFN65_RS12975 (RFN65_12975) mreBH 2557804..2558811 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  RFN65_RS12980 (RFN65_12980) ykpC 2558912..2559046 (+) 135 WP_003238865.1 protein YkpC -
  RFN65_RS12985 (RFN65_12985) ampS 2559156..2560388 (+) 1233 WP_309529627.1 aminopeptidase -
  RFN65_RS12990 (RFN65_12990) panEB 2560422..2561333 (-) 912 WP_251218379.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=875842 RFN65_RS12970 WP_003244728.1 2557242..2557520(-) (abrB) [Bacillus subtilis strain CP35]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=875842 RFN65_RS12970 WP_003244728.1 2557242..2557520(-) (abrB) [Bacillus subtilis strain CP35]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576