Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RFN65_RS06925 Genome accession   NZ_CP133703
Coordinates   1374090..1374836 (+) Length   248 a.a.
NCBI ID   WP_309530187.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1369090..1379836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS06910 (RFN65_06910) - 1369317..1369508 (-) 192 WP_003222590.1 hypothetical protein -
  RFN65_RS06915 (RFN65_06915) valS 1369956..1372598 (+) 2643 WP_309530186.1 valine--tRNA ligase -
  RFN65_RS06920 (RFN65_06920) folC 1372658..1373950 (+) 1293 WP_251218154.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RFN65_RS06925 (RFN65_06925) comC 1374090..1374836 (+) 747 WP_309530187.1 A24 family peptidase Machinery gene
  RFN65_RS06930 (RFN65_06930) spoIIB 1374970..1375968 (+) 999 WP_063335537.1 stage II sporulation protein SpoIIB -
  RFN65_RS06935 (RFN65_06935) maf 1376121..1376690 (+) 570 WP_309530188.1 Maf family nucleotide pyrophosphatase -
  RFN65_RS06940 (RFN65_06940) radC 1376727..1377422 (+) 696 WP_014480455.1 DNA repair protein RadC -
  RFN65_RS06945 (RFN65_06945) mreB 1377514..1378527 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  RFN65_RS06950 (RFN65_06950) mreC 1378558..1379430 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26454.99 Da        Isoelectric Point: 9.7944

>NTDB_id=875817 RFN65_RS06925 WP_309530187.1 1374090..1374836(+) (comC) [Bacillus subtilis strain CP35]
MLSILFIFGLILGSFYYTAGCRIPLHLSIITPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPATELVSA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARVISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=875817 RFN65_RS06925 WP_309530187.1 1374090..1374836(+) (comC) [Bacillus subtilis strain CP35]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTACGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGAATTTCTTTTATGTATCCCGCAACAGAGCTTGTGTCAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAACCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGAGTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98