Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RFN65_RS00095 Genome accession   NZ_CP133703
Coordinates   18007..18525 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain CP35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 13007..23525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS00075 (RFN65_00075) yyzM 14081..14287 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  RFN65_RS00080 (RFN65_00080) yyaE 14338..16341 (+) 2004 WP_309529934.1 molybdopterin-dependent oxidoreductase -
  RFN65_RS00085 (RFN65_00085) ychF 16468..17568 (+) 1101 WP_015483981.1 redox-regulated ATPase YchF -
  RFN65_RS00090 (RFN65_00090) rpsF 17679..17966 (+) 288 WP_003236622.1 30S ribosomal protein S6 -
  RFN65_RS00095 (RFN65_00095) ssbA 18007..18525 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  RFN65_RS00100 (RFN65_00100) rpsR 18569..18808 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  RFN65_RS00105 (RFN65_00105) xth 18873..19631 (+) 759 WP_064671669.1 exodeoxyribonuclease III -
  RFN65_RS00110 (RFN65_00110) ccpB 19690..20625 (+) 936 WP_309529935.1 transcriptional regulator CcpB -
  RFN65_RS00115 (RFN65_00115) yyaH 20681..21061 (+) 381 WP_309529936.1 VOC family protein -
  RFN65_RS00120 (RFN65_00120) maa 21077..21631 (+) 555 WP_015385213.1 sugar O-acetyltransferase -
  RFN65_RS00125 (RFN65_00125) yyaJ 21665..23020 (-) 1356 WP_181220376.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=875796 RFN65_RS00095 WP_003219228.1 18007..18525(+) (ssbA) [Bacillus subtilis strain CP35]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=875796 RFN65_RS00095 WP_003219228.1 18007..18525(+) (ssbA) [Bacillus subtilis strain CP35]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378