Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RG306_RS19785 Genome accession   NZ_CP133666
Coordinates   4274705..4275031 (-) Length   108 a.a.
NCBI ID   WP_004826222.1    Uniprot ID   A0A0A8TPZ3
Organism   Acinetobacter bereziniae strain UCO-553     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4269705..4280031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS19765 (RG306_19765) - 4269727..4270485 (-) 759 WP_200150014.1 FHA domain-containing protein -
  RG306_RS19770 (RG306_19770) gspD 4270659..4272905 (-) 2247 WP_200150015.1 type II secretion system secretin GspD -
  RG306_RS19775 (RG306_19775) - 4272947..4273798 (-) 852 WP_004826224.1 type II secretion system protein N -
  RG306_RS19780 (RG306_19780) gspN 4273798..4274541 (-) 744 WP_200150016.1 type II secretion system protein N -
  RG306_RS19785 (RG306_19785) hns 4274705..4275031 (-) 327 WP_004826222.1 H-NS family nucleoid-associated regulatory protein Regulator
  RG306_RS19790 (RG306_19790) - 4275258..4275695 (-) 438 WP_004826221.1 thioesterase family protein -
  RG306_RS19795 (RG306_19795) - 4275705..4276898 (-) 1194 WP_005035264.1 membrane protein -
  RG306_RS19800 (RG306_19800) - 4276900..4277733 (-) 834 WP_200150017.1 hypothetical protein -
  RG306_RS19805 (RG306_19805) - 4277730..4278512 (-) 783 WP_005035260.1 uroporphyrinogen-III synthase -
  RG306_RS19810 (RG306_19810) hemC 4278523..4279449 (-) 927 WP_026040287.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12354.13 Da        Isoelectric Point: 8.4039

>NTDB_id=875780 RG306_RS19785 WP_004826222.1 4274705..4275031(-) (hns) [Acinetobacter bereziniae strain UCO-553]
MMPDISNLSVEELRKLTAEAEALIESKKDQAIEDAYNKIVEIAESAGLSLEQFIEYGAQKRKKTTRKAVEPRYRNKKNTA
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=875780 RG306_RS19785 WP_004826222.1 4274705..4275031(-) (hns) [Acinetobacter bereziniae strain UCO-553]
ATGATGCCTGATATTAGTAATTTATCTGTTGAAGAGTTAAGAAAGTTAACAGCTGAAGCTGAAGCTTTAATTGAGAGTAA
AAAAGATCAAGCGATCGAAGATGCTTATAATAAGATTGTTGAAATTGCAGAATCTGCGGGTTTAAGCCTAGAGCAGTTTA
TTGAGTATGGTGCTCAAAAACGTAAAAAGACAACACGTAAAGCTGTTGAGCCACGCTACCGCAATAAGAAAAATACAGCT
GAAACTTGGACGGGTCGTGGTAAGCAACCTCGCTGGTTGGTTGCTGAAATTGAAAAAGGCGCTAAATTAGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TPZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815