Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   RG306_RS01940 Genome accession   NZ_CP133666
Coordinates   433537..435762 (-) Length   741 a.a.
NCBI ID   WP_005034245.1    Uniprot ID   N9D081
Organism   Acinetobacter bereziniae strain UCO-553     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428537..440762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS01925 (RG306_01925) - 432364..432753 (+) 390 WP_005034252.1 hypothetical protein -
  RG306_RS01930 (RG306_01930) - 433027..433323 (+) 297 WP_227567252.1 hypothetical protein -
  RG306_RS01935 (RG306_01935) - 433358..433486 (+) 129 WP_009587170.1 hypothetical protein -
  RG306_RS01940 (RG306_01940) priA 433537..435762 (-) 2226 WP_005034245.1 primosomal protein N' Machinery gene
  RG306_RS01945 (RG306_01945) gspF 435931..437136 (+) 1206 WP_281104147.1 type II secretion system inner membrane protein GspF -
  RG306_RS01950 (RG306_01950) gspG 437172..437609 (+) 438 WP_004825310.1 type II secretion system major pseudopilin GspG -
  RG306_RS01955 (RG306_01955) - 437891..438226 (+) 336 WP_005034242.1 hypothetical protein -
  RG306_RS01960 (RG306_01960) - 438311..438568 (-) 258 WP_005034240.1 DUF2798 domain-containing protein -
  RG306_RS01965 (RG306_01965) - 439265..439603 (+) 339 WP_100884414.1 tRNA-binding protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84238.70 Da        Isoelectric Point: 8.9471

>NTDB_id=875752 RG306_RS01940 WP_005034245.1 433537..435762(-) (priA) [Acinetobacter bereziniae strain UCO-553]
MPNTIVTPQTIYRVQVAVPVYLNDCFDYQVSAEQYAQAEIGARVAVSFGRQNLVGVIVKKIPIDEPIDSHFKLKAIIELL
DDHAILDSKVLNLLTWSSQYYQFPIGEVIQTALPTLLRQGKPYDLLARVWKVIDLHAEDKVKRSEKQQDAYKILKLHPKA
TQENILNLSGIETATLKVLEKKAIIQFALEPQNTQPEPVQLAQLPLTPNEDQKKAIQTILKALKKYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDSKRLQAWQHAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIESYYLARQEKLTRIELNQRAGVALMPKMHL
IDLKVAKKQHGLSDVLIGEIKKRLDKKEQVLIFLNRRGYAPVLICESCGWQANCPNCDAHFTLHLKPYQHLHCHHCGTIN
RLPDACPQCNQQQLKPIGMGTAKVEETLIELFPNFPVLRVDRDSTSRVGSWQKIYDQIQKSEPTILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDFRATERTAQLIIQVAGRAGRGENKGEVYLQTLRPDHPLLNTLIHNDYRTFAKQTLKDRQAALL
PPFRYASLIRCESKHQEENLKFLTEMTQLLRQMSEPHLIDIWGPIPAPMERKAGRYQAHVVLLSQDRAKMHFYVHQWWTQ
LLQQKPSTMKVTIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=875752 RG306_RS01940 WP_005034245.1 433537..435762(-) (priA) [Acinetobacter bereziniae strain UCO-553]
ATGCCGAATACCATTGTTACACCACAAACTATTTATCGTGTTCAAGTTGCTGTTCCAGTGTATTTGAATGACTGTTTTGA
CTATCAAGTGAGTGCTGAACAGTACGCACAGGCAGAAATCGGTGCACGTGTTGCTGTGTCTTTCGGACGACAAAATCTTG
TTGGGGTGATTGTAAAAAAAATTCCGATTGATGAACCTATAGACTCTCATTTTAAACTCAAAGCAATTATTGAACTATTA
GATGATCACGCTATTCTAGACAGTAAAGTTTTAAATTTATTGACATGGTCATCGCAATATTACCAATTCCCAATTGGTGA
GGTGATTCAAACTGCCCTTCCTACATTACTCCGCCAAGGTAAACCTTATGATTTATTGGCTCGTGTTTGGAAAGTGATAG
ATTTACATGCTGAAGACAAAGTAAAGCGTTCTGAAAAACAACAAGATGCTTATAAAATTCTAAAATTACATCCAAAAGCA
ACGCAGGAAAATATCCTAAATCTGAGTGGTATTGAAACAGCAACACTAAAAGTGCTTGAGAAAAAAGCAATTATCCAATT
TGCACTTGAACCTCAAAATACTCAACCTGAACCAGTTCAATTGGCTCAGTTGCCACTCACTCCCAATGAAGATCAAAAGA
AAGCCATCCAAACGATTTTAAAGGCACTAAAGAAATATCAAGCATTTTTGTTAGATGGTTTAACGGGAAGTGGTAAAACT
GAGGTTTATTTACAAGTGATGCACGAAGTACTGAAACAAGGCAAACAAGTGCTTGTTTTAGTCCCTGAAATTGGCTTAAC
ACCACAAACCATCAGCCGTTTTCAGTCACGCTTTCATTGCAATATTGCATTGCTTCACTCCGGTTTAAATGACAGCAAAC
GTTTACAAGCATGGCAACATGCACAAACAGGTAAAGCCTCTATTATTTTAGGGACTCGCTCTGCAATTTATACACCCTTA
CCTAATCTCGGTTTAATTATTCTGGATGAAGAGCATGATCTTTCATTTAAACAACAAGAAGGTTTCCGTTATCATGCCCG
TGATGTTGCGTTATACCGTGCGCATTTAGAAAATTGTCCAATTATCTTAGGTTCTGCCACACCAAGTATTGAAAGCTATT
ATTTGGCTCGTCAAGAAAAGCTGACACGTATTGAATTAAATCAACGTGCAGGCGTCGCATTGATGCCGAAAATGCATTTG
ATTGATTTAAAAGTTGCTAAGAAGCAACATGGCTTAAGTGATGTTTTAATCGGGGAAATTAAAAAGCGTTTAGATAAAAA
AGAACAGGTCTTAATCTTTTTAAATCGTCGCGGTTATGCACCTGTATTAATTTGTGAAAGTTGTGGATGGCAAGCCAACT
GCCCAAATTGTGATGCACACTTTACCTTACACTTAAAACCTTATCAGCATTTACACTGTCATCATTGTGGGACGATTAAT
CGCTTGCCTGATGCCTGCCCACAATGCAATCAACAACAATTAAAACCAATCGGCATGGGAACTGCAAAGGTTGAAGAAAC
CTTAATTGAATTATTCCCCAACTTTCCTGTACTTCGCGTCGATCGGGATTCAACTAGCCGTGTCGGCAGTTGGCAGAAAA
TCTATGATCAGATTCAAAAAAGTGAACCCACGATTTTGCTTGGGACGCAAATGCTCGCTAAAGGGCATCATTTCCCCTAT
GTCACTTTGGTTGCAATCTTAGATATAGATGCAGGTTTACTCAGTGTCGACTTTCGAGCAACAGAGCGTACAGCCCAATT
GATTATTCAAGTTGCAGGTCGGGCAGGTCGTGGAGAGAACAAAGGAGAAGTCTATTTGCAAACACTTCGACCTGATCATC
CTTTATTAAATACTTTGATTCACAATGACTATCGAACCTTTGCCAAGCAAACCTTAAAAGATCGTCAAGCCGCTTTGCTT
CCCCCTTTTCGCTATGCCAGTTTGATACGTTGTGAATCTAAACATCAGGAAGAAAATCTAAAGTTTTTGACTGAAATGAC
GCAATTACTTCGTCAAATGTCGGAACCACATTTAATCGATATTTGGGGACCTATTCCAGCTCCAATGGAGCGGAAAGCAG
GTCGTTACCAAGCACATGTGGTATTGCTTTCACAAGATCGAGCAAAAATGCACTTTTATGTGCATCAATGGTGGACCCAA
TTACTACAGCAAAAACCCTCTACAATGAAAGTAACGATTGATGTTGATCCACAAGAGTTGAGTTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(207-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Helicase conserved C-terminal domain (Helicase_C)

(532-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D081

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.525

100

0.715