Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   RGC89_RS01520 Genome accession   NZ_CP133663
Coordinates   344522..345418 (+) Length   298 a.a.
NCBI ID   WP_309478149.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain AR4072     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 339522..350418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGC89_RS01500 (RGC89_01500) - 340207..341751 (+) 1545 WP_001830616.1 NAD(P)H-binding protein -
  RGC89_RS01505 (RGC89_01505) - 341874..343343 (-) 1470 WP_002484631.1 alkaline phosphatase -
  RGC89_RS01510 (RGC89_01510) - 343641..343820 (+) 180 WP_001830653.1 hypothetical protein -
  RGC89_RS01515 (RGC89_01515) braR 343851..344516 (+) 666 WP_001830679.1 response regulator transcription factor Regulator
  RGC89_RS01520 (RGC89_01520) braS 344522..345418 (+) 897 WP_309478149.1 sensor histidine kinase Regulator
  RGC89_RS01525 (RGC89_01525) - 345529..346278 (+) 750 WP_001830627.1 ABC transporter ATP-binding protein -
  RGC89_RS01530 (RGC89_01530) - 346280..348292 (+) 2013 WP_002456335.1 ABC transporter permease -
  RGC89_RS01535 (RGC89_01535) - 348396..348986 (+) 591 WP_001830621.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34898.57 Da        Isoelectric Point: 7.2750

>NTDB_id=875711 RGC89_RS01520 WP_309478149.1 344522..345418(+) (braS) [Staphylococcus epidermidis strain AR4072]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEHELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLSLSYLKLLNEESDMTITKVTVDDL
IRPLLLKYRIQFIEQKTQIHYKKSEDIILTDAQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNHGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=875711 RGC89_RS01520 WP_309478149.1 344522..345418(+) (braS) [Staphylococcus epidermidis strain AR4072]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTGTTTTCTTTACCTTTTGATGCATACGTACTTGCAATCAGTATAATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAACGAACATCTTAAAGATAAAGTAGCATATTTAGAACATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAACGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGTCTCTCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGCTTTTAAAATATAGAATTCAGTTTATTGAGCAAAAGACGCAAATCCATTATAAAAAAAGTGAGGACAT
TATTTTAACCGATGCACAATGGGCGTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATTTGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACTGGTATAGGTTTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAATTGAATCATGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

59.322

98.993

0.587