Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   RGC89_RS00280 Genome accession   NZ_CP133663
Coordinates   61714..63060 (-) Length   448 a.a.
NCBI ID   WP_000816499.1    Uniprot ID   Q9R3W9
Organism   Staphylococcus epidermidis strain AR4072     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56714..68060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGC89_RS00250 (RGC89_00250) - 57784..58107 (-) 324 WP_000088091.1 JAB domain-containing protein -
  RGC89_RS00255 (RGC89_00255) - 58100..58306 (-) 207 WP_001077283.1 hypothetical protein -
  RGC89_RS00260 (RGC89_00260) - 58308..58829 (-) 522 WP_000836008.1 DUF1643 domain-containing protein -
  RGC89_RS00265 (RGC89_00265) - 58848..59159 (-) 312 WP_000833212.1 DUF960 family protein -
  RGC89_RS00270 (RGC89_00270) - 59244..59594 (-) 351 WP_000171449.1 SAUGI family uracil-DNA glycosylase inhibitor -
  RGC89_RS00275 (RGC89_00275) ccrB 60065..61693 (-) 1629 WP_001186596.1 cassette chromosome recombinase CcrB Machinery gene
  RGC89_RS00280 (RGC89_00280) ccrA 61714..63060 (-) 1347 WP_000816499.1 cassette chromosome recombinase CcrA Machinery gene
  RGC89_RS00285 (RGC89_00285) - 63253..63528 (-) 276 WP_001791132.1 hypothetical protein -
  RGC89_RS00290 (RGC89_00290) cch1 63618..65405 (-) 1788 WP_000181743.1 cassette chromosome replicative helicase -
  RGC89_RS00295 (RGC89_00295) ssb 65405..65689 (-) 285 WP_000659554.1 cassette chromosome ssDNA-binding protein -
  RGC89_RS00300 (RGC89_00300) - 65827..66876 (+) 1050 WP_000613217.1 hypothetical protein -
  RGC89_RS00305 (RGC89_00305) - 66929..67501 (+) 573 WP_000489177.1 ADP-ribosyltransferase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 52138.19 Da        Isoelectric Point: 10.1760

>NTDB_id=875709 RGC89_RS00280 WP_000816499.1 61714..63060(-) (ccrA) [Staphylococcus epidermidis strain AR4072]
MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTERIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFMSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQ
NGTFIINNDESPTVKAVFNYYLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK
YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKKHTLRYYICPKNMNESRFVCSFKGINAQKLEVQVLATC
QNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLIDKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQK
VIQKSFTLNMLHPYIDEIRITKNKALVGIYFKNEPLNIVNQTSQSSIA

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=875709 RGC89_RS00280 WP_000816499.1 61714..63060(-) (ccrA) [Staphylococcus epidermidis strain AR4072]
ATGAAACGAGCCATTGGTTATTTGCGCCAAAGTACAACGAAACAACAATCACTCCCAGCTCAAAAGCAAGCAATAGAATT
ATTAGCTCCAAAGCACAATATTCAAAATATCCAATACATTAGTGATAAGCAATCAGGCAGAACAGATAATCGAACAGGCT
ATCAACAAGTCACCGAACGCATCCAACAAAGACAATGTGACGTATTATGTTGTTATCGCTTGAATCGACTTCATCGCAAC
TTGAAAAATGCATTAAAACTCATGAAACTCTGTCAAAAATATCATGTTCATATTCTAAGTGTTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTCAATATATTCATGAGTCTGGCTGAACTTGAATCCGATAATATTGGAGAAC
AAGTCAAAAATGGACTTAGAGAAAAGGCAAAACAAGGTAAACTCATAACGACCCATGCGCCTTTCGGTTATCACTATCAA
AATGGTACTTTCATCATTAATAATGATGAATCACCTACCGTCAAAGCTGTATTCAATTATTATCTTCAAGGATATGGCTA
CAAGAAGATTGCACAATATTTAGAAGACGATAATAAACTTATTACCCGCAAGCCTTATCAGGTACGAAATATAATTATGA
ACCCAAATTATTGTGGTCGTGTCATCAATCAATATGGTCAATATAACAATATGGTACCACCTATTGTTTCGGCAACGAAA
TATGAACATGCTCAAGCAATCCGTAATAAGAAGCAACTTCACTGTATACCTTCAGAGAATCAGCTGAAACAAAAGATCAA
ATGTCCTTGTTGTGACTCAACACTGACAAATATGACAATAAGAAAAAAACATACATTGCGATATTATATTTGTCCTAAAA
ATATGAATGAATCTCGCTTTGTCTGTTCATTCAAAGGAATAAATGCACAAAAATTAGAAGTTCAAGTCTTAGCTACATGT
CAGAACTTCTTTCAAAACCAACAGCTCTATTCAAAAATTAATAATGCAATTCATCAACGCCTCAAAAAACAAAGAGTGAT
AGAAGCTAAAAGTACGCTAACTCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAATCATTCAGAA
AACAGACTCATTTGATGAATCAAAAGCACAAAACCATATCCTCCATAAGTGATAATCAGTTACAAACATCACTACAAAAG
GTTATACAGAAAAGTTTCACGTTAAACATGCTGCATCCCTATATTGATGAAATTCGCATTACAAAAAATAAAGCCCTTGT
TGGGATCTATTTCAAAAATGAACCATTGAACATTGTGAACCAAACCTCGCAATCATCGATTGCTTAA

Domains

Predicted by InterProScan.

Recombinase (Recombinase)

(168-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

78.174

100

0.783
  ccrA Staphylococcus aureus N315

72.383

100

0.725