Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   AABK23_RS03995 Genome accession   NZ_AP027576
Coordinates   842924..844168 (-) Length   414 a.a.
NCBI ID   WP_021513234.1    Uniprot ID   -
Organism   Escherichia coli strain LR-62-2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 837924..849168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK23_RS03980 (VEE29_07710) - 838035..840797 (+) 2763 WP_032221635.1 glycosyltransferase -
  AABK23_RS03985 (VEE29_07720) - 840810..841547 (+) 738 WP_019842682.1 DUF6270 domain-containing protein -
  AABK23_RS03990 (VEE29_07730) - 842187..842861 (+) 675 WP_019842683.1 ABC transporter ATP-binding protein -
  AABK23_RS03995 (VEE29_07740) kpsS 842924..844168 (-) 1245 WP_021513234.1 capsular biosynthesis protein Regulator
  AABK23_RS04000 (VEE29_07750) - 844203..846230 (-) 2028 WP_032221628.1 capsular polysaccharide biosynthesis protein -
  AABK23_RS04005 (VEE29_07760) kdsB 846227..846967 (-) 741 WP_001596179.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABK23_RS04010 (VEE29_07770) - 846977..848653 (-) 1677 WP_001301060.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 49431.05 Da        Isoelectric Point: 9.9644

>NTDB_id=87569 AABK23_RS03995 WP_021513234.1 842924..844168(-) (kpsS) [Escherichia coli strain LR-62-2]
MQDNALTVLLSGKKYLLLQGPMGPFFNDIAEWLESLGRNVVNVVFNGGDRFYCRNRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWANTKEIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPQVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQINAVYYGSADFGEDKTS
EKHFINIIKKIIHP

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=87569 AABK23_RS03995 WP_021513234.1 842924..844168(-) (kpsS) [Escherichia coli strain LR-62-2]
ATGCAAGATAATGCACTAACCGTCTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGACCAATGGGACCTTTTTTCAA
TGACATCGCGGAATGGTTAGAGTCATTAGGCCGTAACGTTGTGAATGTTGTATTCAACGGCGGAGATCGTTTTTACTGCC
GCAATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGTTGGTTGCGAGATCTCCACCGACAATATGAC
TTTGATACCATCCTCTGCTTTGGCGACTGCCGCCCATTACACAAAGAAGCAAAACGGTGGGCGAATACGAAAGAGATCCG
CTTTCTGGCATTTGAAGAGGGGTATTTACGTCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCAAGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
GAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATATATGTGCACGATCTGCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTAATGAAGACGCAGATTAATGCTGTTTATTATGGGAGTGCTGATTTTGGAGAAGATAAAACATCA
GAAAAACATTTTATCAATATAATCAAAAAAATCATACACCCATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.589

93.961

0.372

Multiple sequence alignment