Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RFN81_RS01730 Genome accession   NZ_CP133656
Coordinates   362029..363555 (-) Length   508 a.a.
NCBI ID   WP_264497511.1    Uniprot ID   -
Organism   Pectobacterium cacticida strain CFBP3628     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 357029..368555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN81_RS01720 (RFN81_01720) hdfR 360635..361462 (-) 828 WP_264497509.1 HTH-type transcriptional regulator HdfR -
  RFN81_RS01725 (RFN81_01725) - 361582..361920 (+) 339 WP_264497510.1 DUF413 domain-containing protein -
  RFN81_RS01730 (RFN81_01730) comM 362029..363555 (-) 1527 WP_264497511.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RFN81_RS01735 (RFN81_01735) ilvL 363962..364060 (+) 99 WP_071531109.1 ilv operon leader peptide -
  RFN81_RS01740 (RFN81_01740) ilvG 364200..365846 (+) 1647 WP_264497512.1 acetolactate synthase 2 catalytic subunit -
  RFN81_RS01745 (RFN81_01745) ilvM 365885..366145 (+) 261 WP_264497513.1 acetolactate synthase 2 small subunit -
  RFN81_RS01750 (RFN81_01750) - 366170..367096 (+) 927 WP_264497514.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55464.05 Da        Isoelectric Point: 7.1301

>NTDB_id=875614 RFN81_RS01730 WP_264497511.1 362029..363555(-) (comM) [Pectobacterium cacticida strain CFBP3628]
MSLAVTYTRAMIGVQAPDVCIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPGDNKREMALIPQGEALMAEHL
LEVCAFLSGEEELSRCTDTIPVAAPNEDEFDMKDIIGQGQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
NEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVRYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHH
QGESSAAIRERVLLARQVQLKRSNKINALLTSREIEKYCVLTTPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGERD
DIERKHLSEALSYRSMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=875614 RFN81_RS01730 WP_264497511.1 362029..363555(-) (comM) [Pectobacterium cacticida strain CFBP3628]
ATGTCATTGGCAGTCACCTATACCCGGGCAATGATTGGTGTACAAGCGCCAGATGTCTGTATCGAAGTTCACATTAGTAG
CGGGCTTCCAGCGCTCACGCTGGTGGGTTTACCAGAAACTACCGTCAAGGAAGCACGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGGTTTACCTTCCCCGCCAAGCGCATAACAGTCAATCTCGCGCCCGCAGATCTCCCAAAAGAAGGAGGACGC
TACGATCTGCCGATCGCATTAGCGATTCTGGCGGCATCAGAACAAATCGATGGCGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAGCTCGGTCTGTCTGGCACGCTACGCGGCGTAAATGGCGCTATCCCAGCAGCATTGGAAGCCATAAAATCCGGGC
GTCAGCTTATCCTGCCAGGTGATAATAAGCGGGAGATGGCCCTGATACCGCAAGGTGAAGCGCTAATGGCCGAGCATTTA
CTGGAAGTGTGTGCGTTTCTCAGTGGTGAAGAGGAATTATCCCGGTGTACAGACACCATACCAGTTGCGGCGCCGAATGA
GGATGAATTCGATATGAAAGATATCATCGGCCAGGGGCAAGCCAAACGGGCATTGGAGATCGCGGCGGCGGGAGGGCATA
ACCTTCTATTACTGGGGCCTCCGGGAACAGGAAAGACCATGCTGGCAAGCCGCTTAGGCAATTTGATGCCGCCACTAAGC
AACGAGGAGGCATTAGAAAGCGCAGCCATCAATAGCCTAATCAACATTGACGCTACCATGACACGCTGGCGAGCCAGACC
GTTCAGAGCCCCTCATCATAGTTCTTCCATGGCGGCGCTGGTCGGCGGCGGATCGCTGCCTAAACCCGGGGAAATCTCAC
TGGCCCATAACGGTGTACTTTTTTTAGATGAATTGCCGGAGTTCGAGCGACGCGTTCTAGATTCACTACGAGAGCCACTG
GAGTCCGGCGAAATAATTATTTCTCGCACCCGTGCCAAAGTGCGTTACCCAGCACGCGTTCAGCTCGTCGCAGCAATGAA
TCCCAGCCCTTCAGGCCACTATCAAGGCATTCATAACCGATTACCAGCGCAACAAATATTACGCTATCTCAGCAAACTTT
CCGGCCCTTTCTTGGATCGCTTCGATCTTTCGATTGAAGTTCCTTTGCTACCACCAGGCGTTTTGTCTCAGCAACACCAT
CAGGGGGAAAGTAGTGCGGCGATTCGAGAGCGTGTGCTGCTCGCACGCCAAGTACAATTGAAACGGTCAAATAAAATTAA
CGCGCTACTCACCTCACGAGAAATAGAAAAATACTGTGTGCTAACGACGCCTGATGCGGCCTATTTGGAAGAAGTGATGA
ACAAGCTTGGCTTATCTGTACGTGCATGGCACAGGATATTGAAGGTCGCTCGTACAATCGCTGACCTCGGCGAGCGAGAC
GACATAGAGAGGAAACACTTATCCGAAGCGCTAAGCTATCGTAGCATGGATCGGTTACTCATCCAGCTTCATAAGAGTCT
CGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

62.919

99.803

0.628
  comM Haemophilus influenzae Rd KW20

63.043

99.606

0.628
  comM Vibrio campbellii strain DS40M4

62.598

100

0.626
  comM Legionella pneumophila str. Paris

50.905

97.835

0.498
  comM Legionella pneumophila strain ERS1305867

50.905

97.835

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.498

100

0.47