Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RFN60_RS16020 Genome accession   NZ_CP133653
Coordinates   3089631..3090275 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3084631..3095275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS15985 (RFN60_15985) mrpB 3085821..3086252 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  RFN60_RS15990 (RFN60_15990) mrpC 3086252..3086593 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  RFN60_RS15995 (RFN60_15995) mrpD 3086586..3088067 (+) 1482 WP_046381299.1 Na+/H+ antiporter subunit D -
  RFN60_RS16000 (RFN60_16000) mrpE 3088073..3088549 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  RFN60_RS16005 (RFN60_16005) mrpF 3088549..3088833 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  RFN60_RS16010 (RFN60_16010) mnhG 3088817..3089191 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  RFN60_RS16015 (RFN60_16015) yuxO 3089232..3089612 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  RFN60_RS16020 (RFN60_16020) comA 3089631..3090275 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  RFN60_RS16025 (RFN60_16025) comP 3090356..3092668 (-) 2313 WP_041332996.1 sensor histidine kinase Regulator
  RFN60_RS16030 (RFN60_16030) comX 3092684..3092905 (-) 222 WP_014480704.1 competence pheromone ComX -
  RFN60_RS16035 (RFN60_16035) - 3092907..3093770 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  RFN60_RS16040 (RFN60_16040) degQ 3093955..3094095 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  RFN60_RS16045 (RFN60_16045) - 3094317..3094442 (+) 126 WP_003228793.1 hypothetical protein -
  RFN60_RS16050 (RFN60_16050) - 3094557..3094925 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=875595 RFN60_RS16020 WP_003220716.1 3089631..3090275(-) (comA) [Bacillus subtilis strain CP38]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=875595 RFN60_RS16020 WP_003220716.1 3089631..3090275(-) (comA) [Bacillus subtilis strain CP38]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1