Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RFN60_RS14040 Genome accession   NZ_CP133653
Coordinates   2701232..2701978 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2696232..2706978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS14015 (RFN60_14015) mreC 2696638..2697510 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  RFN60_RS14020 (RFN60_14020) mreB 2697541..2698554 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  RFN60_RS14025 (RFN60_14025) radC 2698646..2699341 (-) 696 WP_003246034.1 DNA repair protein RadC -
  RFN60_RS14030 (RFN60_14030) maf 2699378..2699947 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  RFN60_RS14035 (RFN60_14035) spoIIB 2700100..2701098 (-) 999 WP_015714459.1 stage II sporulation protein SpoIIB -
  RFN60_RS14040 (RFN60_14040) comC 2701232..2701978 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  RFN60_RS14045 (RFN60_14045) folC 2702120..2703412 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RFN60_RS14050 (RFN60_14050) valS 2703472..2706114 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  RFN60_RS14055 (RFN60_14055) - 2706562..2706753 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=875590 RFN60_RS14040 WP_072592551.1 2701232..2701978(-) (comC) [Bacillus subtilis strain CP38]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=875590 RFN60_RS14040 WP_072592551.1 2701232..2701978(-) (comC) [Bacillus subtilis strain CP38]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996