Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RFN60_RS12000 Genome accession   NZ_CP133653
Coordinates   2358006..2358809 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2353006..2363809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS11975 (RFN60_11975) glpQB 2354145..2354876 (-) 732 WP_015251738.1 glycerophosphodiester phosphodiesterase -
  RFN60_RS11980 (RFN60_11980) yqiI 2354955..2355575 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  RFN60_RS11985 (RFN60_11985) - 2355595..2355891 (-) 297 WP_014480225.1 hypothetical protein -
  RFN60_RS11990 (RFN60_11990) - 2356199..2356351 (+) 153 WP_014480226.1 hypothetical protein -
  RFN60_RS11995 (RFN60_11995) yqiG 2356424..2357542 (+) 1119 WP_015251737.1 NADH-dependent flavin oxidoreductase -
  RFN60_RS12000 (RFN60_12000) spo0A 2358006..2358809 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  RFN60_RS12005 (RFN60_12005) spoIVB 2359085..2360365 (-) 1281 WP_015251736.1 SpoIVB peptidase -
  RFN60_RS12010 (RFN60_12010) recN 2360540..2362270 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  RFN60_RS12015 (RFN60_12015) argR 2362307..2362756 (-) 450 WP_003230265.1 arginine repressor ArgR -
  RFN60_RS12020 (RFN60_12020) yqxC 2362854..2363699 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=875571 RFN60_RS12000 WP_003226427.1 2358006..2358809(-) (spo0A) [Bacillus subtilis strain CP38]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=875571 RFN60_RS12000 WP_003226427.1 2358006..2358809(-) (spo0A) [Bacillus subtilis strain CP38]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1