Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RFN60_RS11010 Genome accession   NZ_CP133653
Coordinates   2180917..2181537 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2175917..2186537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS10970 (RFN60_10970) ptsA 2177048..2177554 (-) 507 WP_044052678.1 PTS glucose transporter subunit IIA -
  RFN60_RS10975 (RFN60_10975) ypqA 2177692..2178111 (+) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  RFN60_RS10980 (RFN60_10980) sppG 2178132..2178509 (-) 378 WP_015251832.1 YppG family protein -
  RFN60_RS10985 (RFN60_10985) yppF 2178697..2178885 (+) 189 WP_003230690.1 YppF family protein -
  RFN60_RS10990 (RFN60_10990) yppE 2178924..2179295 (-) 372 WP_003246080.1 YppE family protein -
  RFN60_RS10995 (RFN60_10995) yppD 2179341..2179586 (-) 246 WP_015251831.1 YppD family protein -
  RFN60_RS11000 (RFN60_11000) sspM 2179785..2179889 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  RFN60_RS11005 (RFN60_11005) yppC 2179914..2180876 (-) 963 WP_015251830.1 DUF2515 domain-containing protein -
  RFN60_RS11010 (RFN60_11010) recU 2180917..2181537 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  RFN60_RS11015 (RFN60_11015) ponA 2181559..2184303 (+) 2745 WP_042976357.1 transglycosylase domain-containing protein -
  RFN60_RS11020 (RFN60_11020) ypoC 2184379..2184873 (-) 495 WP_029726783.1 YpoC family protein -
  RFN60_RS11025 (RFN60_11025) nth 2184870..2185529 (-) 660 WP_009967580.1 endonuclease III -
  RFN60_RS11030 (RFN60_11030) dnaD 2185548..2186246 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=875570 RFN60_RS11010 WP_004399067.1 2180917..2181537(+) (recU) [Bacillus subtilis strain CP38]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=875570 RFN60_RS11010 WP_004399067.1 2180917..2181537(+) (recU) [Bacillus subtilis strain CP38]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1