Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   RFN60_RS07670 Genome accession   NZ_CP133653
Coordinates   1466304..1466879 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1461304..1471879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS07640 (RFN60_07640) dapD 1461490..1462200 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  RFN60_RS07645 (RFN60_07645) dapI 1462270..1463394 (+) 1125 WP_021479383.1 N-acetyldiaminopimelate deacetylase -
  RFN60_RS07650 (RFN60_07650) ykuS 1463456..1463701 (+) 246 WP_003232382.1 YkuS family protein -
  RFN60_RS07655 (RFN60_07655) mscT 1463738..1464541 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  RFN60_RS07660 (RFN60_07660) ahpA 1464778..1465320 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  RFN60_RS07665 (RFN60_07665) ykuV 1465392..1465838 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  RFN60_RS07670 (RFN60_07670) rok 1466304..1466879 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  RFN60_RS07675 (RFN60_07675) cse15 1466920..1467885 (-) 966 WP_048654871.1 spore protein Cse15 -
  RFN60_RS07680 (RFN60_07680) mobA 1468022..1468621 (+) 600 WP_015252185.1 molybdenum cofactor guanylyltransferase -
  RFN60_RS07685 (RFN60_07685) moeB 1468672..1469691 (+) 1020 WP_032721477.1 molybdopterin-synthase adenylyltransferase MoeB -
  RFN60_RS07690 (RFN60_07690) glp 1469709..1471001 (+) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  RFN60_RS07695 (RFN60_07695) mobB 1470962..1471483 (+) 522 WP_029725925.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=875564 RFN60_RS07670 WP_003232378.1 1466304..1466879(+) (rok) [Bacillus subtilis strain CP38]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=875564 RFN60_RS07670 WP_003232378.1 1466304..1466879(+) (rok) [Bacillus subtilis strain CP38]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1