Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RFN60_RS07555 Genome accession   NZ_CP133653
Coordinates   1447105..1447569 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain CP38     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1442105..1452569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS07535 (RFN60_07535) kinA 1442572..1444392 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  RFN60_RS07540 (RFN60_07540) dapX 1444402..1445583 (-) 1182 WP_015252196.1 aminotransferase A -
  RFN60_RS07545 (RFN60_07545) - 1445785..1445946 (-) 162 WP_003245246.1 hypothetical protein -
  RFN60_RS07550 (RFN60_07550) cheV 1446150..1447061 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  RFN60_RS07555 (RFN60_07555) kre 1447105..1447569 (-) 465 WP_003232406.1 YkyB family protein Regulator
  RFN60_RS07560 (RFN60_07560) ykuC 1447695..1448987 (-) 1293 WP_015252195.1 MFS transporter -
  RFN60_RS07565 (RFN60_07565) ltdD 1449063..1449557 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  RFN60_RS07570 (RFN60_07570) ppeE 1449614..1450474 (-) 861 WP_003232400.1 metallophosphoesterase -
  RFN60_RS07575 (RFN60_07575) fadH 1450617..1451381 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=875563 RFN60_RS07555 WP_003232406.1 1447105..1447569(-) (kre) [Bacillus subtilis strain CP38]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=875563 RFN60_RS07555 WP_003232406.1 1447105..1447569(-) (kre) [Bacillus subtilis strain CP38]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1