Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   RFN60_RS06050 Genome accession   NZ_CP133653
Coordinates   1173106..1174059 (+) Length   317 a.a.
NCBI ID   WP_032721344.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168106..1179059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS06025 (RFN60_06025) argF 1169939..1170898 (+) 960 WP_032721338.1 ornithine carbamoyltransferase -
  RFN60_RS06030 (RFN60_06030) yjzC 1170984..1171163 (+) 180 WP_003245356.1 YjzC family protein -
  RFN60_RS06035 (RFN60_06035) yjzD 1171209..1171394 (-) 186 WP_029317607.1 YjzD family protein -
  RFN60_RS06040 (RFN60_06040) - 1171643..1172377 (+) 735 WP_032721340.1 hypothetical protein -
  RFN60_RS06045 (RFN60_06045) - 1172459..1173016 (+) 558 WP_032721343.1 hypothetical protein -
  RFN60_RS06050 (RFN60_06050) med 1173106..1174059 (+) 954 WP_032721344.1 transcriptional regulator Med Regulator
  RFN60_RS06055 (RFN60_06055) comZ 1174074..1174265 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  RFN60_RS06060 (RFN60_06060) yjzB 1174295..1174534 (-) 240 WP_003232972.1 spore coat protein YjzB -
  RFN60_RS06065 (RFN60_06065) fabH 1174699..1175637 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  RFN60_RS06070 (RFN60_06070) fabF 1175660..1176901 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  RFN60_RS06075 (RFN60_06075) yjaZ 1176977..1177762 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  RFN60_RS06080 (RFN60_06080) appD 1177954..1178940 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35323.84 Da        Isoelectric Point: 4.6031

>NTDB_id=875554 RFN60_RS06050 WP_032721344.1 1173106..1174059(+) (med) [Bacillus subtilis strain CP38]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGNLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=875554 RFN60_RS06050 WP_032721344.1 1173106..1174059(+) (med) [Bacillus subtilis strain CP38]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CAACCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.369

100

0.994