Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RFN60_RS05595 Genome accession   NZ_CP133653
Coordinates   1083604..1084182 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain CP38     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078604..1089182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS20985 - 1079115..1079630 (-) 516 WP_372553879.1 methyl-accepting chemotaxis protein -
  RFN60_RS20990 - 1079871..1080497 (-) 627 Protein_1034 protoglobin domain-containing protein -
  RFN60_RS05580 (RFN60_05580) comW 1080552..1082081 (-) 1530 WP_015252423.1 FAD-dependent oxidoreductase -
  RFN60_RS05585 (RFN60_05585) yhxC 1082193..1083050 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  RFN60_RS05590 (RFN60_05590) yhzC 1083078..1083311 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  RFN60_RS05595 (RFN60_05595) comK 1083604..1084182 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  RFN60_RS05600 (RFN60_05600) yhxD 1084229..1085128 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  RFN60_RS05605 (RFN60_05605) yhjA 1085344..1085613 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  RFN60_RS05610 (RFN60_05610) yhjB 1085656..1087125 (-) 1470 WP_046380906.1 sodium:solute symporter -
  RFN60_RS05615 (RFN60_05615) yhjC 1087122..1087322 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  RFN60_RS05620 (RFN60_05620) - 1087521..1087892 (-) 372 WP_014476361.1 hypothetical protein -
  RFN60_RS05625 (RFN60_05625) yhjE 1088044..1088667 (+) 624 WP_046380907.1 TVP38/TMEM64 family protein -
  RFN60_RS05630 (RFN60_05630) lepB 1088669..1089175 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=875551 RFN60_RS05595 WP_003245329.1 1083604..1084182(+) (comK) [Bacillus subtilis strain CP38]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=875551 RFN60_RS05595 WP_003245329.1 1083604..1084182(+) (comK) [Bacillus subtilis strain CP38]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1