Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RFN60_RS04530 Genome accession   NZ_CP133653
Coordinates   892125..892919 (+) Length   264 a.a.
NCBI ID   WP_003243354.1    Uniprot ID   A0AAE2SGN5
Organism   Bacillus subtilis strain CP38     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 887125..897919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS04500 (RFN60_04500) sxzA 887964..888995 (+) 1032 WP_029317459.1 iron chelate uptake ABC transporter family permease subunit -
  RFN60_RS04505 (RFN60_04505) yfhB 889110..889991 (+) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  RFN60_RS04510 (RFN60_04510) yfhC 890079..890663 (+) 585 WP_046160214.1 nitroreductase -
  RFN60_RS04515 (RFN60_04515) yfhD 890702..890893 (-) 192 WP_003233561.1 YfhD family protein -
  RFN60_RS04520 (RFN60_04520) yfhE 890960..891070 (-) 111 WP_003223230.1 YfhE family protein -
  RFN60_RS04525 (RFN60_04525) yfhF 891125..892036 (-) 912 WP_044052591.1 TIGR01777 family oxidoreductase -
  RFN60_RS04530 (RFN60_04530) recX 892125..892919 (+) 795 WP_003243354.1 recombination regulator RecX Regulator
  RFN60_RS04535 (RFN60_04535) yfhH 892921..893235 (+) 315 WP_003244592.1 YfhH family protein -
  RFN60_RS04540 (RFN60_04540) yfhI 893378..894571 (+) 1194 WP_003243500.1 MFS transporter -
  RFN60_RS04545 (RFN60_04545) sspK 894603..894755 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  RFN60_RS04550 (RFN60_04550) yfhJ 894880..895149 (+) 270 WP_015252516.1 YfhJ family protein -
  RFN60_RS04555 (RFN60_04555) yfhK 895294..895812 (+) 519 WP_015252515.1 SH3 domain-containing protein -
  RFN60_RS04560 (RFN60_04560) spdL 895897..896229 (+) 333 WP_003242803.1 SdpC immunity protein SpdL -
  RFN60_RS04565 (RFN60_04565) ephM 896216..897076 (+) 861 WP_014479220.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31013.23 Da        Isoelectric Point: 6.6686

>NTDB_id=875546 RFN60_RS04530 WP_003243354.1 892125..892919(+) (recX) [Bacillus subtilis strain CP38]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=875546 RFN60_RS04530 WP_003243354.1 892125..892919(+) (recX) [Bacillus subtilis strain CP38]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

100

100

1