Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   V8N34_RS09740 Genome accession   NZ_CP149804
Coordinates   2007679..2008128 (-) Length   149 a.a.
NCBI ID   WP_172013865.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2002679..2013128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS09720 (V8N34_09720) - 2003111..2003644 (-) 534 WP_024386082.1 histidine phosphatase family protein -
  V8N34_RS09725 (V8N34_09725) - 2003651..2004094 (-) 444 WP_318825308.1 dUTP diphosphatase -
  V8N34_RS09730 (V8N34_09730) - 2004195..2005979 (-) 1785 WP_318825307.1 ABC transporter ATP-binding protein -
  V8N34_RS09735 (V8N34_09735) - 2005980..2007686 (-) 1707 WP_172059754.1 ABC transporter transmembrane domain-containing protein -
  V8N34_RS09740 (V8N34_09740) rcrR 2007679..2008128 (-) 450 WP_172013865.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V8N34_RS09745 (V8N34_09745) - 2008350..2009366 (+) 1017 WP_012027922.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  V8N34_RS09750 (V8N34_09750) galU 2009411..2010313 (+) 903 WP_044682151.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  V8N34_RS09755 (V8N34_09755) - 2010339..2011016 (-) 678 WP_318825306.1 rhomboid family intramembrane serine protease -
  V8N34_RS09760 (V8N34_09760) - 2011000..2011542 (-) 543 WP_318825305.1 5-formyltetrahydrofolate cyclo-ligase -
  V8N34_RS09765 (V8N34_09765) - 2011583..2012710 (-) 1128 WP_318825304.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17509.04 Da        Isoelectric Point: 8.1233

>NTDB_id=875520 V8N34_RS09740 WP_172013865.1 2007679..2008128(-) (rcrR) [Streptococcus suis strain YA]
MGHTIADFRNLLNQIEQISGTIAKEYDVEHLAGPQGWALRFIAERSDLETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKENIKRYKETNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=875520 V8N34_RS09740 WP_172013865.1 2007679..2008128(-) (rcrR) [Streptococcus suis strain YA]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGGAACGATTGCCAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGGTGGGCTTTGCGTTTCATAGCAGAACGGTCAGACCTTGAAACCTTTGTCAAAG
ATATTGAAGCGGAGTTGAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGACAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTTTTTAGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTGGCCG
ATCAATTAAAAGAAAATATTAAACGTTATAAGGAGACGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416