Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   V8N34_RS08630 Genome accession   NZ_CP149804
Coordinates   1773408..1776233 (-) Length   941 a.a.
NCBI ID   WP_257110193.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1768408..1781233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS08610 (V8N34_08610) - 1768739..1769086 (-) 348 WP_044677913.1 hypothetical protein -
  V8N34_RS08615 (V8N34_08615) - 1769101..1770147 (-) 1047 WP_044677911.1 hypothetical protein -
  V8N34_RS08620 (V8N34_08620) - 1770212..1773070 (-) 2859 WP_257110192.1 G5 domain-containing protein -
  V8N34_RS08625 (V8N34_08625) - 1773209..1773382 (+) 174 WP_002942417.1 YlcI/YnfO family protein -
  V8N34_RS08630 (V8N34_08630) uvrA 1773408..1776233 (-) 2826 WP_257110193.1 excinuclease ABC subunit UvrA Machinery gene
  V8N34_RS08635 (V8N34_08635) - 1776972..1777916 (+) 945 WP_339059834.1 magnesium transporter CorA family protein -
  V8N34_RS08640 (V8N34_08640) - 1777932..1778588 (+) 657 WP_044753820.1 DUF1129 domain-containing protein -
  V8N34_RS08645 (V8N34_08645) rpsR 1778978..1779217 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  V8N34_RS08650 (V8N34_08650) ssbA 1779250..1779744 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  V8N34_RS08655 (V8N34_08655) rpsF 1779756..1780046 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  V8N34_RS08660 (V8N34_08660) - 1780218..1781207 (-) 990 WP_318825356.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103863.03 Da        Isoelectric Point: 6.0560

>NTDB_id=875509 V8N34_RS08630 WP_257110193.1 1773408..1776233(-) (uvrA) [Streptococcus suis strain YA]
MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGL
SPAISIDQKTTSRNPRSTVGTATEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKK
GQHKTIFEKVQKDGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKEGIRSRLFDSIEAALRIADGYVIIDTMDE
KELLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCSDCDGLGMKLEVDTDLIVPDASKTLREGALAPWNPISSNYYPQML
EQAMNHFGVDMDKPFEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYTRTVMKTYM
NELTCGTCHGYRLNDQALSVKVGGEQGLHIGQLSDLSVADHLEVIENLTLSENEATIATPIVKEIKDRLSFLNNVGLNYL
TLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DIGPGAGVFGGEIVASGTPAQVAKNKKSITGQYLSGKREIPVPLDRRVGNGRFLEVTGAKENNLQDVTVRFPLGKFVAVT
GVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKTISGIEHLDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVEFF
KHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDIAQLLKVLARFVD
DGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGTVVATGTPEEVASNPASFTGQYLKMKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=875509 V8N34_RS08630 WP_257110193.1 1773408..1776233(-) (uvrA) [Streptococcus suis strain YA]
ATGCAAGAAAATATTGTGATTCATGGGGCGCGTGCCCATAATTTGAAAAATATTGATGTGACCATTCCGCGTGAGAAGTT
GGTGGTGGTGACTGGTTTGTCGGGGTCTGGTAAGTCGAGTTTGGCTTTTGATACCTTGTATGCCGAAGGTCAACGCCGTT
ACGTAGAGTCTTTGTCTGCCTATGCTCGTCAGTTCTTGGGCAACATGGACAAACCTGATGTGGATTCCATAGAGGGTCTC
AGCCCTGCTATTTCCATAGACCAAAAAACAACCTCGCGTAACCCGCGTTCGACGGTTGGAACGGCAACGGAAATCAATGA
CTATCTCCGCCTGCTTTATGCTCGGGTCGGTGTGCCGTACTGTATCAATGGTCACGGAGCGATTGCAGCTTCTTCGGTGG
AACAAATCGTTGATGAGGTCTTGGAATTGCCAGAACGCCAGCGTTTGCAGATCCTAGCTCCGATTGTGCGGAAGAAAAAG
GGGCAACACAAGACTATTTTTGAGAAAGTCCAGAAGGATGGCTACGTTCGGGTGCGGGTCAATGGCGATGTCTATGATGT
GTCGGAAGTGCCTGAGTTGTCCAAGAGCAAGGCTCACAACATTGAGGTCGTGGTCGATCGGATTGTCATCAAAGAAGGCA
TTCGCTCGCGGCTTTTTGACTCCATTGAGGCGGCTCTGCGGATTGCGGACGGTTATGTCATCATCGATACCATGGATGAG
AAGGAATTGCTTTTCTCCGAGTACTATGCCTGCCCAGTTTGTGGCTTTACGGTGCCCGAGTTGGAGCCTCGCCTCTTCTC
TTTCAATGCTCCTTTTGGGTCTTGTAGCGACTGTGACGGTTTGGGCATGAAGCTGGAAGTGGATACGGATTTGATTGTCC
CAGATGCCAGCAAGACCTTGCGTGAGGGTGCTTTGGCTCCTTGGAATCCAATCTCTTCCAACTACTACCCTCAGATGTTG
GAGCAAGCTATGAACCACTTTGGTGTGGACATGGACAAGCCTTTTGAGGAATTGACGGAAGAGGAGAAGAACCTGATTTT
CAACGGTTCTGACGGAAAAGAATTCCATTTCCATTATGAAAATGAGTTCGGTGGAGTCCGAGACATCGACATTCCATTTG
AGGGCCTGATTACCAATATTAACCGCCGCTACCGTGAAACCAATAGTGATTACACGCGGACGGTCATGAAGACTTATATG
AATGAATTGACCTGTGGGACCTGCCACGGCTATCGCCTCAATGACCAAGCTCTTTCTGTTAAAGTTGGTGGCGAGCAGGG
ACTTCATATCGGGCAGCTGTCTGACTTGTCCGTGGCGGATCATCTGGAAGTCATTGAAAATCTGACCTTGTCTGAAAATG
AAGCAACTATTGCAACACCGATTGTCAAGGAAATCAAGGATCGTTTGTCCTTCCTTAATAACGTTGGTCTCAACTATCTG
ACCCTTTCACGAGCTGCAGGAACCCTTTCGGGTGGTGAAAGCCAGCGGATTCGCCTGGCGACTCAGATTGGCTCTAACCT
GTCTGGTGTTCTTTACATCTTGGATGAGCCATCGATTGGTTTGCACCAGCGGGATAATGACCGCCTGATTGCCAGTCTTA
AGAAAATGCGTGATTTGGGCAATACCTTGATCGTGGTGGAGCATGATGAGGACACTATGCGTGAGGCGGACTGGTTGATT
GACATTGGTCCAGGTGCGGGTGTCTTTGGTGGAGAAATCGTGGCTTCTGGAACGCCTGCCCAAGTAGCTAAAAATAAGAA
ATCCATCACAGGCCAGTATCTATCTGGCAAACGTGAAATTCCTGTTCCTCTAGACCGCCGTGTTGGAAATGGTCGTTTCC
TAGAGGTAACAGGTGCCAAGGAAAACAATCTGCAAGATGTAACGGTTCGTTTCCCACTCGGAAAATTTGTTGCGGTGACA
GGGGTATCTGGCTCTGGTAAGTCAACTCTGGTCAACTCCATTTTGAAAAAAGCCATTGCTCAGAAGCTCAATCGAAATTC
GGACAAGCCAGGCAAGTTCAAAACCATTTCAGGAATTGAACACTTGGACCGCCTGATTGATATTGACCAAAGCCCGATTG
GACGGACACCGCGTTCCAACCCAGCCACCTACACTGGTGTCTTTGACGATATTCGTGACCTCTTTGCCCAGACCAATGAA
GCCAAAATTCGTGGCTACAAGAAGGGGCGTTTCTCTTTTAACGTCAAAGGTGGTCGTTGTGAAGCCTGCTCGGGTGACGG
GATTATCAAGATTGAAATGCACTTCCTGCCAGATGTCTTTGTTCCTTGTGAAGTCTGTCATGGCCACCGCTACAATTCTG
AAACCTTGGAAGTACACTACAAGGAGAAAAATATTGCTCAGGTCCTCGATATGACGGTCAATGATGCGGTCGAGTTCTTC
AAACACATTCCAAAAATTGAGCGGAAACTCCGCACCATTCAAGATGTGGGCTTGGGTTATGTTACCCTTGGACAGCCTGC
GACAACCCTGTCAGGTGGTGAGGCCCAGCGGATGAAATTGGCTTCTGAACTCCACAAGCGGTCAACTGGTAAGTCTCTCT
ATATCTTGGATGAGCCAACGACTGGCCTACATACTGAGGATATTGCCCAGTTGCTCAAGGTCTTGGCCCGTTTTGTCGAT
GACGGCAACACTGTCCTTGTCATCGAGCACAATCTAGATGTCATCAAGACAGCAGACCATATTATCGACATGGGACCGGA
AGGCGGTGTCGGTGGCGGTACCGTTGTCGCGACAGGAACGCCAGAAGAAGTAGCTAGTAACCCAGCCAGCTTTACAGGTC
AGTATTTGAAAATGAAGTTGAAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

89.468

99.894

0.894
  uvrA Streptococcus pneumoniae TIGR4

89.468

99.894

0.894
  uvrA Streptococcus pneumoniae D39

89.468

99.894

0.894