Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   V8N34_RS04905 Genome accession   NZ_CP149804
Coordinates   1017454..1018119 (+) Length   221 a.a.
NCBI ID   WP_339059883.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1012454..1023119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS04865 (V8N34_04865) - 1012562..1012699 (+) 138 WP_162841163.1 hypothetical protein -
  V8N34_RS04870 (V8N34_04870) - 1012712..1013446 (+) 735 WP_318825386.1 TraX family protein -
  V8N34_RS04875 (V8N34_04875) - 1013545..1013685 (+) 141 WP_032535054.1 hypothetical protein -
  V8N34_RS04880 (V8N34_04880) - 1013698..1014087 (+) 390 WP_024400584.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  V8N34_RS04885 (V8N34_04885) - 1014096..1014848 (+) 753 WP_011922409.1 ABC transporter ATP-binding protein -
  V8N34_RS04890 (V8N34_04890) - 1014849..1016819 (+) 1971 WP_074389880.1 FtsX-like permease family protein -
  V8N34_RS04895 (V8N34_04895) - 1016911..1017162 (+) 252 WP_012775104.1 DUF6290 family protein -
  V8N34_RS04900 (V8N34_04900) - 1017146..1017412 (+) 267 WP_024405694.1 type II toxin-antitoxin system RelE/ParE family toxin -
  V8N34_RS04905 (V8N34_04905) braR 1017454..1018119 (+) 666 WP_339059883.1 response regulator transcription factor Regulator
  V8N34_RS04910 (V8N34_04910) - 1018116..1019057 (+) 942 WP_024385221.1 sensor histidine kinase -
  V8N34_RS04915 (V8N34_04915) - 1019133..1020641 (+) 1509 WP_024385220.1 phosphoglucomutase -
  V8N34_RS04920 (V8N34_04920) xerS 1020866..1021936 (-) 1071 WP_024385219.1 tyrosine recombinase XerS Machinery gene
  V8N34_RS04925 (V8N34_04925) - 1022210..1022728 (-) 519 WP_318825385.1 AAA family ATPase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25449.19 Da        Isoelectric Point: 4.7736

>NTDB_id=875490 V8N34_RS04905 WP_339059883.1 1017454..1018119(+) (braR) [Streptococcus suis strain YA]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDINLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSSESEQVQLSPTETKILS
TLLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFDRIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=875490 V8N34_RS04905 WP_339059883.1 1017454..1018119(+) (braR) [Streptococcus suis strain YA]
ATGAAAAAAGAAAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCTTA
TCAGGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCGGAAATCAAACCAGACTTAGTGCTGATGGACA
TTAACTTGCCCTATTACAACGGTTTTTATTGGACAACGGAAATCCGTAAAACCATGACCATGCCAATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTTTCTAAGCCATTTTCTCTAGG
AATTTTGGATGCCAAAATCGGTGCCTTCTTACGTCGAGTCAATCAATTCAGCAAATCAACTGACTTGTCTATCGACCAGT
TCCAGCTTAGTTTGGATGGGCGTTTTTCAAGCGAATCGGAACAGGTTCAATTGTCTCCTACAGAAACCAAGATTTTATCC
ACCTTACTAGAACGACAAGGGCAGATTGTCAGTAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATCGA
TCAGAATACCCTCAATGTCAACATGACTCGTCTGCGTAAGAAGGTGAGTGAAGTGGGATTCGACCGTATTCATACTGTTC
GTGGCGTGGGGTACCTGGTCAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.182

99.548

0.48