Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B0703_RS00530 Genome accession   NZ_CP133648
Coordinates   132834..134675 (+) Length   613 a.a.
NCBI ID   WP_085345689.1    Uniprot ID   A0AAF0VD14
Organism   Bifidobacterium adolescentis strain 703B     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 127834..139675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0703_RS00505 (B0703_00505) thiF 127851..128564 (-) 714 WP_085345672.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  B0703_RS00510 (B0703_00510) thiS 128617..128811 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  B0703_RS00515 (B0703_00515) - 129247..130269 (+) 1023 WP_179140897.1 aldo/keto reductase -
  B0703_RS00520 (B0703_00520) - 130453..130944 (+) 492 WP_311007982.1 MarR family transcriptional regulator -
  B0703_RS00525 (B0703_00525) rcrP 131071..132822 (+) 1752 WP_003807380.1 ABC transporter ATP-binding protein Regulator
  B0703_RS00530 (B0703_00530) rcrQ 132834..134675 (+) 1842 WP_085345689.1 ABC transporter ATP-binding protein Regulator
  B0703_RS00535 (B0703_00535) - 134846..135826 (+) 981 WP_085345688.1 aldo/keto reductase family oxidoreductase -
  B0703_RS00540 (B0703_00540) - 135911..136963 (-) 1053 WP_085345687.1 FAD:protein FMN transferase -
  B0703_RS00545 (B0703_00545) - 137504..139189 (+) 1686 WP_236837722.1 FTR1 family protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67417.18 Da        Isoelectric Point: 6.7614

>NTDB_id=875477 B0703_RS00530 WP_085345689.1 132834..134675(+) (rcrQ) [Bifidobacterium adolescentis strain 703B]
MPRGMGRGRGAVEKPKDFGGVMKKLVKFCSRYIPVMILALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAMVHGKPVMNS
IDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQQLREAISQKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSVGSLITSITLFFGALIMMFYNNVTMTLCAIGSALLGLIIMGVIMKVSQKYFTRQQVALGDVNGHVEEMYTGHTVVK
AYCGEERSIEQFEKYNNDLYVSGWKSQFLSGLMMPIMNFVGNFGYVVVCVVGAALAMDGKIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEEPELSDETGKQALLGVGADGKPRPVRGDVEFSHVRFGYDADKTIINDFSASVKAG
QKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKDVTDEQI
VAACKAVGLHHYIMSLPNGYDTVLDDKASLSQGQRQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRT
SFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKSGFYADIYNSQFTLAE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=875477 B0703_RS00530 WP_085345689.1 132834..134675(+) (rcrQ) [Bifidobacterium adolescentis strain 703B]
ATGCCAAGAGGAATGGGACGCGGCCGTGGGGCCGTGGAAAAGCCGAAGGACTTCGGCGGAGTGATGAAGAAGCTCGTGAA
ATTCTGCAGCCGGTACATTCCGGTGATGATTCTCGCGCTGGTTCTGGGCGCTGCCGGCACGGTGTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCACGAAGGGTCTGCCGGCCATGGTGCACGGCAAGCCCGTCATGAATTCG
ATCGATATGGACGCGGTGTCGCGCATCGCATGGCTGCTCGTCGCGCTGTACGTCGGGTACGCGCTGCTGAGCTACCTGCA
GAGCTGGCTGATGGCCAACGTCACGCAACGCACGGCACAGCAGCTGCGTGAGGCGATCAGCCAGAAAATCAATCGCCTGC
CGCTGAAATATTTCGACAAAGTCAGCTACGGCGACGTGCTGAGCCGCATCACCAACGACGTCGACGCGATCGGACAGACG
CTCGGCCAGTCGGTCGGCTCGCTGATCACTTCGATCACGCTGTTCTTCGGCGCGCTCATCATGATGTTCTACAACAACGT
GACCATGACGCTGTGCGCCATCGGCTCCGCGCTGCTCGGCCTGATCATCATGGGCGTGATCATGAAGGTGTCGCAGAAGT
ACTTCACCCGCCAGCAGGTGGCGCTCGGCGACGTCAACGGCCACGTCGAGGAAATGTACACCGGCCACACCGTGGTCAAG
GCATACTGCGGCGAGGAACGCTCCATCGAGCAGTTCGAGAAGTACAACAACGACCTGTACGTGTCCGGCTGGAAAAGCCA
GTTCCTGTCCGGCCTGATGATGCCGATCATGAACTTCGTCGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTCGGCGCGG
CGCTCGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTG
TCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGCATCCGAACGCGTCTTCGGCTTCCTTGAGGAGCC
GGAACTGTCCGACGAAACCGGCAAGCAGGCGCTGCTGGGCGTCGGCGCGGACGGCAAGCCGCGGCCGGTGCGCGGCGACG
TGGAATTCAGCCACGTGCGCTTCGGCTACGACGCGGACAAGACCATCATCAACGACTTCTCCGCGTCCGTGAAGGCCGGC
CAGAAGGTGGCTATCGTCGGCCCGACCGGCGCCGGCAAGACCACGATGGTCAACCTGCTGATGCGGTTCTACGAGATTTC
CGGCGGCACGATTTCGATCGACGGCATCGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGC
TGCAGGACACGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCAAAGAAGGACGTCACCGACGAGCAGATC
GTGGCCGCATGCAAGGCCGTCGGCCTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGACAA
GGCGTCGCTTTCCCAGGGCCAGCGTCAGCTGCTGACGATCGCGCGAGCGATGGTGGAGGACGCGCCGATCCTGATCCTCG
ACGAGGCCACCTCGTCTGTCGACACCCGTACCGAAGAGCTGATTCAGAAGGCGATGGACGCGCTGACCGTGGGCCGCACG
AGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATCCTGGTGATGAACGGCGGCGACATCGTGGA
ACGCGGCACGCACGAGGAACTGCTCGCGAAGTCCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCCGAGT
GA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-538)

ABC transporter transmembrane region (ABC_membrane)

(36-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.746

96.248

0.527